Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30365g00011 ATGAGTGGTTACGATGTGGATGGAAACAGAAACCATGACAACTCATTCTTCAGTTTCCATAACCCATCATCAGATAGAAGCTATTGGAACAAAAGAATCTTGGTCATGGCCATAGCTTCCTTAACAATCGTCATAATCGTGGTGCTGGCACTTCACATCTATGCAAGGTTTGTTCTCAGACGCCAAGCTCGAAGAAGATTCGCTATTCACCAACTCAGCCTCACAATACAAGCCCAAGCACATCACCATGAACATCATCACAACAGAGGCCTCGACCCTAGCATCATAGCCACTCTCCCAATCTTAAAGAAGAAAGAACAAGAAGATGATGATGATTATGGTGGTGGTGAGTGTGCTGTGTGTTTGAGTGTTGTGGAAGATGAACAAGAGGTGAGGTTGCTGCCAAATTGCAAGCACAGTTTCCATGTTGGTTGCATAGATACATGGCTAACTTGGAATTCCACGTGTCCCATTTGTAGAACCAAGGCTGAACCAATCATAAGGATTCAGCTTGAACCTCACCCTCGTGAGCCTCCTGCTATTCCTGCTCTTGATGATGCTTCAATTCTACTTGAAGGTACTTCCAATGCTGCTATTGAGGAGTCATCATCAAAAAATATCAGTGGTTCTTCTTCTGTTTCAAGATTCAGCAGCTCTTTTAGAAGGATGCTAAGTAGGGATAGATCTTCTTCCAGAATCCAACCTTCAATAATTACCCATCTTGATCATCATGATCTTGAGAGCCAGCAGTGA 753 0.4303 MSGYDVDGNRNHDNSFFSFHNPSSDRSYWNKRILVMAIASLTIVIIVVLALHIYARFVLRRQARRRFAIHQLSLTIQAQAHHHEHHHNRGLDPSIIATLPILKKKEQEDDDDYGGGECAVCLSVVEDEQEVRLLPNCKHSFHVGCIDTWLTWNSTCPICRTKAEPIIRIQLEPHPREPPAIPALDDASILLEGTSNAAIEESSSKNISGSSSVSRFSSSFRRMLSRDRSSSRIQPSIITHLDHHDLESQQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30365g00011 250 SUPERFAMILY RING/U-box 105 167 - -
Stsc30365g00011 250 SMART ring_2 118 159 IPR001841 -
Stsc30365g00011 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 28 204 - -
Stsc30365g00011 250 CDD RING-H2_EL5-like 117 160 - -
Stsc30365g00011 250 FunFam E3 ubiquitin-protein ligase ATL6 79 165 - -
Stsc30365g00011 250 Pfam Ring finger domain 117 160 IPR001841 -
Stsc30365g00011 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 166 IPR013083 -
Stsc30365g00011 250 MobiDBLite consensus disorder prediction 225 250 - -
Stsc30365g00011 250 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30365g00011 Stsc-Chr30365 43182 43934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30365g00011 1 247 C3H Transcription Factor Family AT2G42360 42.972 7.19e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30365g00011 K19038 - gmx:100780265 189.504