Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30365g00011 | ATGAGTGGTTACGATGTGGATGGAAACAGAAACCATGACAACTCATTCTTCAGTTTCCATAACCCATCATCAGATAGAAGCTATTGGAACAAAAGAATCTTGGTCATGGCCATAGCTTCCTTAACAATCGTCATAATCGTGGTGCTGGCACTTCACATCTATGCAAGGTTTGTTCTCAGACGCCAAGCTCGAAGAAGATTCGCTATTCACCAACTCAGCCTCACAATACAAGCCCAAGCACATCACCATGAACATCATCACAACAGAGGCCTCGACCCTAGCATCATAGCCACTCTCCCAATCTTAAAGAAGAAAGAACAAGAAGATGATGATGATTATGGTGGTGGTGAGTGTGCTGTGTGTTTGAGTGTTGTGGAAGATGAACAAGAGGTGAGGTTGCTGCCAAATTGCAAGCACAGTTTCCATGTTGGTTGCATAGATACATGGCTAACTTGGAATTCCACGTGTCCCATTTGTAGAACCAAGGCTGAACCAATCATAAGGATTCAGCTTGAACCTCACCCTCGTGAGCCTCCTGCTATTCCTGCTCTTGATGATGCTTCAATTCTACTTGAAGGTACTTCCAATGCTGCTATTGAGGAGTCATCATCAAAAAATATCAGTGGTTCTTCTTCTGTTTCAAGATTCAGCAGCTCTTTTAGAAGGATGCTAAGTAGGGATAGATCTTCTTCCAGAATCCAACCTTCAATAATTACCCATCTTGATCATCATGATCTTGAGAGCCAGCAGTGA | 753 | 0.4303 | MSGYDVDGNRNHDNSFFSFHNPSSDRSYWNKRILVMAIASLTIVIIVVLALHIYARFVLRRQARRRFAIHQLSLTIQAQAHHHEHHHNRGLDPSIIATLPILKKKEQEDDDDYGGGECAVCLSVVEDEQEVRLLPNCKHSFHVGCIDTWLTWNSTCPICRTKAEPIIRIQLEPHPREPPAIPALDDASILLEGTSNAAIEESSSKNISGSSSVSRFSSSFRRMLSRDRSSSRIQPSIITHLDHHDLESQQ | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30365g00011 | 250 | SUPERFAMILY | RING/U-box | 105 | 167 | - | - | |
Stsc30365g00011 | 250 | SMART | ring_2 | 118 | 159 | IPR001841 | - | |
Stsc30365g00011 | 250 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE | 28 | 204 | - | - | |
Stsc30365g00011 | 250 | CDD | RING-H2_EL5-like | 117 | 160 | - | - | |
Stsc30365g00011 | 250 | FunFam | E3 ubiquitin-protein ligase ATL6 | 79 | 165 | - | - | |
Stsc30365g00011 | 250 | Pfam | Ring finger domain | 117 | 160 | IPR001841 | - | |
Stsc30365g00011 | 250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 166 | IPR013083 | - | |
Stsc30365g00011 | 250 | MobiDBLite | consensus disorder prediction | 225 | 250 | - | - | |
Stsc30365g00011 | 250 | ProSiteProfiles | Zinc finger RING-type profile. | 118 | 160 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30365g00011 | Stsc-Chr30365 | 43182 | 43934 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30365g00011 | 1 | 247 | C3H Transcription Factor Family | AT2G42360 | 42.972 | 7.19e-52 | 167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30365g00011 | K19038 | - | gmx:100780265 | 189.504 |