Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30361g00014 ATGGTTGAGAAAGGAACACATGTTGAACTAGTAAAGGATCCCGAAGGAGCTTACTCTCAGCTTATACGTTTACAAGAGGTAAAAGAGGATTCATTAAAGAATGCAGACAATGAAAACAAGTGTGAACTCTCAAAAAGTCGAAGGTGGTCATTTCAAAGATCAGGTTCATCTGTTGGTAGTAGTAGCCGCCACTCAATTTCCTTTGCCTTACCCACAGGAGCTAACATCCTTGATCTTAAAGTTGAAACTCCAACAGAAGAGTATGTACCATCAGAAGAGGTTCCACTATGGTGGCTTTCTTCCCTTAACAAGCCAGAGATTCCGGTGCTTCTTATGGGATGTATAGCAGCCACTGCAAATGGTGCTATATGGCCAGTGTTTGGTTTGCTGCTTTCTAGTGCCATCAAAACATTCTATGAACCATTCAATGAGTTAAAAAAGGATTCAAGGTTTTGGGCACTAATGTTTTTGACCCTTGGACTTGCATCTTTCATAGCTATTATAGCAAGAGGATACTTTTTCTCTGTGGCTGGCCATAAGCTAATCCAACGCATCAGGCTGCTATGTTTTGAGAAGGTGATCAACATGGAGGTTTCATGGTTTGATGAGGCTGAGCACTCGAGTGGTGCAATTGGTTCAAGGCTCTCGGCAGATGCTACATCTGTGCGTGCCCTCGTTGGGGATGCATTAGGACTAATAGTTCAAAATATTGCAACAGCATGTACAGGGTTGATCATTGCTTTTGTTGCAAGCTGGCAATTAGCATTGATCATTGTTGTCATAGTCCCTCTTGTTGGATTGAATGGATATGTTCAAATGAAGTTTTTGAAAGGCTTCAGTTCAGATACAAAGAGGATGTATGAGGAAGCAAGCCAGGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTGGCATCTTTCTGTGCTGAAGAGAAAGTTATGGAACTTTACAAGAAGAAATGTGAAGGTCCAAGGAAAACAGGAATAAGGCAAGGCTTGATCAGTGGAATAGGATTTGGGGTTTCATTTTTCTTTCTCTATTGTGTCTATGCAACCTGTTTCTATGCTGGAGCTAGATTTGTGAAAGATGGCAAGGCATCATTCTCAGATGTTTTAAGGGTTTTCTTTGCTTTAACTATGGCAGCTAATGGAATTTCCCAATCAAGCTCACTTGCTCCTGATTCTAGCAAAGCCAAGTCAGCTGCTGCTTCCATATTTGGATTACTTGACATGAAGTCAAAGATAGATCCAAGTGATGAGTCTGGTATAACACTGGCTAATGTAAATGGTGAAATTAAGTTTCGCCATGTAGGGTTTAAGTATCCATCTAGACCAGATATACAGATTTTTAGAGACCTAAGTTTGACAATCCATTCTGGCAAAATAGTGGCCCTTGTTGGTGAGAGTGGAAGTGGGAAATCAACAGTGATTGCTCTGTTACAAAGATTCTATGATCCAGATTTTGGTCAAATCACACTGGACGGGATAGAAATTCAGAAATTGCAGATCAAGTGGTTGAGACAGCAGATAGGACTCGTAGGGCAAGAGCCATTATTATTCAATGACACCATTGGTGCCAACATTGCATATGGCAAAGAAGGCAATGCAACTGAAGCAGAAATCATACAAGTAGCAGAACTGGCCAATGCTCATGGCTTTATTAGTGCCTTACAACAGGGTTATGATACTGTGGTGGGAGAAAGGGGAATACAGCTATCTGGTGGGCAGAAGCAACGTGTGGCCATTGCACGTGCTATAATAAAGAGTCCAAAGATATTGTTACTTGATGAGGCAACAAGTGCATTAGATGCAGAGTCAGAGAGAGTAGTTCAAGATGCATTAGACAAAGTGATAGTGAACAGAACAACTGTGGTTGTGGCACATCGTCTATCTACAATTAAAAATGCAGATGTCATTGCTGTGCTTAAAGATGGGGCTATTGTGGAAAAGGGAAGCCATGAGACGCTCATTACCATGGAGGATGGATTTTATGCTTCCTTGCTCCAGCTTCATTCTAGTGCCTCAACATCATGA 2034 0.4145 MVEKGTHVELVKDPEGAYSQLIRLQEVKEDSLKNADNENKCELSKSRRWSFQRSGSSVGSSSRHSISFALPTGANILDLKVETPTEEYVPSEEVPLWWLSSLNKPEIPVLLMGCIAATANGAIWPVFGLLLSSAIKTFYEPFNELKKDSRFWALMFLTLGLASFIAIIARGYFFSVAGHKLIQRIRLLCFEKVINMEVSWFDEAEHSSGAIGSRLSADATSVRALVGDALGLIVQNIATACTGLIIAFVASWQLALIIVVIVPLVGLNGYVQMKFLKGFSSDTKRMYEEASQVANDAVGSIRTVASFCAEEKVMELYKKKCEGPRKTGIRQGLISGIGFGVSFFFLYCVYATCFYAGARFVKDGKASFSDVLRVFFALTMAANGISQSSSLAPDSSKAKSAAASIFGLLDMKSKIDPSDESGITLANVNGEIKFRHVGFKYPSRPDIQIFRDLSLTIHSGKIVALVGESGSGKSTVIALLQRFYDPDFGQITLDGIEIQKLQIKWLRQQIGLVGQEPLLFNDTIGANIAYGKEGNATEAEIIQVAELANAHGFISALQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVIVNRTTVVVAHRLSTIKNADVIAVLKDGAIVEKGSHETLITMEDGFYASLLQLHSSASTS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30361g00014 677 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 397 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30361g00014 677 Gene3D ABC transporter type 1, transmembrane domain 27 398 IPR036640 GO:0005524|GO:0016020
Stsc30361g00014 677 SUPERFAMILY ABC transporter transmembrane region 97 416 IPR036640 GO:0005524|GO:0016020
Stsc30361g00014 677 ProSitePatterns ABC transporters family signature. 572 586 IPR017871 GO:0005524|GO:0016887
Stsc30361g00014 677 FunFam ABC transporter B family member 9 399 421 - -
Stsc30361g00014 677 FunFam ABC transporter B family member 1 90 398 - -
Stsc30361g00014 677 Pfam ABC transporter transmembrane region 110 380 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30361g00014 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 669 IPR003439 GO:0005524
Stsc30361g00014 677 Pfam ABC transporter 451 600 IPR003439 GO:0005524
Stsc30361g00014 677 Gene3D ABC transporter type 1, transmembrane domain 399 673 IPR036640 GO:0005524|GO:0016020
Stsc30361g00014 677 PANTHER ABC TRANSPORTER B FAMILY 94 670 IPR039421 -
Stsc30361g00014 677 FunFam ABC transporter B family member 1 422 672 - -
Stsc30361g00014 677 Gene3D - 422 672 IPR027417 -
Stsc30361g00014 677 Gene3D - 2 26 IPR027417 -
Stsc30361g00014 677 SMART AAA_5 459 653 IPR003593 GO:0016887
Stsc30361g00014 677 CDD ABC_6TM_Pgp_ABCB1_D2_like 101 415 - -
Stsc30361g00014 677 CDD ABC_MTABC3_MDL1_MDL2 432 670 - -
Stsc30361g00014 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 669 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30361g00014 Stsc-Chr30361 83269 85742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30361g00014 3 676 Calmodulin-binding Proteins AT2G36910 42.052 1.08e-167 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30361g00014 K05658 - gmx:100800034 980.704