Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30361g00008 ATGACAACCTTCCAATTCCAACATTCTATTCTCTTTCAACTGATTCTTATTCTTATATCTCTCCTTACATTGAATACAACAGCATCACCAAAAACAGAAGCAGAAGCACTTGTCAAATGGAAGAACACACTCTCCCATCCTCTTCTTTCTTCACTAAACTCATGGTCACTCACCAACTTCAACAAACTTTGCAGCTGGGAAGCCATTCTTTGTGACAAAACAAACACAACAATCACCCAAATAGACCTCTCTGGTTTCAGCCTCAGTGGTACCCTTGATGCCTTGGCTTTTTCTTCTCTTCCAAACCTCACTCATTTCAACCTCAGTGGCAACAACTTCAATGGATCATTGCCATCTTCCATGGGAACTCTCTCTCTCTCCAAGCTTCAATATCTCAGTTTTCACAACAACAGTTTTAGTGGCACCATTCCTTATCATCTCACTAGTCTTCCCAAGGTATGGTACCTTGACTTTGGGTCAAACTATTTTGCATCTGGAAACTGGTCTCAATATTCATGTTTGCCTTCACTAACATACCTTGACTTGGATCTCAATTCATTCACTCCTGAATTTCCAAGTTTTGTGCTCAAGTGTCAAAGCTTGACTTTCCTTGACCTCTCCCAAAACACTTTCAACGCCACAATACCAGAATCCATGTTTACCAATTTGAGCAAGCTTGAGTACCTTAACCTCACCAACTGTGGTCTGCAAGGACCACTGTCCTCCAATTTGTCCAAGCTCACAAATCTCAAAGAACTTCATATGGGAAACAACATGTTTACTGGTCCTATTCCAGAAAACATAGGATTGATATCAAGCCTTCAGGTTCTTGAGTTGTACAATATTTCAGCCCATGGTGCAATTCCTGCATCATTAGGCCAACTCAAGAACCTCCAACATCTTGATCTAAGAAACAACTTTTTGAATTCTTCAATTCCTTCTGAACTTGGCCATTGCAACAATCTAACCTACCTTGCTTTGGCAGGCAATAATCTCACTGGTCCTTTGCCTTTATCATTATCTAATCTGACCAAACTCTCAGAATTGGGATTATCTGAAAATTCTTTTTCTGGTCAAGTTTCTGCTTCACTGATCTCTAATTGGACCAAGTTGACATCCCTGCAAATCCAAAACAATAATTTGACAGGAAATGTTCCCCCAGAAATTGGCTTGCTGAAAAGGATCAATTATCTCTATTTGTATAACAACACATTGTCAGGTCCAATACCTGTTGAGATTGGAAACTTGAAGGAAATGATAGAATTAGACCTTTCAGGGAACCACTTCTCAGGTAAGATTCCTCCAACCATTTGGAATCTTACAAATATGAAAATATTGAACCTTTTCTTCAATGAGCTCTCTGGAACTATTCCCAAAGATATTGGAAACTTAAAGTCATTGCAGATTTTTGATGTCAACAACAACAAACTAGATGGAGAGTTACCAGATACCATAGCTCAACTAACTGCTTTAAAGCATTTTTCTGTGTTTAGCAATAGATTCTCTGGCAACATTACCCGAGATTTCGGAAAGTATAGTCCTAATTTGGATACTATCTACCTTTCAAACAACACTTTCTCAGGAGAATTGCCACCTGACCTGTGCAATGGTGCTGCTGTGTTAACTATTTTGGCAGTCAATAACAACAGCTTTTCCGGGCCTTTGCCGAAGTCCTTGAGAAATTGTTCAAGTCTAACTAGACTCAGGCTTGATGTTAATCAACTCTCTGGTAACATCACAGAAGCATTTGGGGTTTATAAAAGTCTTGAATTCATCTCACTAAGTGGAAATCACCTTGTTGGTGAGCTTTCTCCAAAGTGGGGTGAATGTGGCAACATAACCAGGATGGAAATGAGCAAAAACAAGCTTTCAGGGAAAATCCCCTCTGAGTTGGGTAAGCTGAGTAGACTAGCATATCTTCGTTTGGATTCCAATGAATTCACAGGCAATATCCCACCTGAAATGGGGAACTTAGCCAAGCTCTTTATGTTCAACATGAGCAAGAATCATATGTCTGGAGAAGTCCCTCAAAGTCTTGGCAGATTGGCTAATCTTAATTTTCTTGATTTATCAGACAACAATTTCATTGGAAGCATCCCTGAAGAGCTTGGTAATCTTCAGAAATTACTAAGCCTGAATTTAAGCCATAACAATCTATCAGGGGAGATACCATCTGAACTTGGCAATCTGTTAGCACTTCAAATCCTCTTAGACCTCAGCAGCAACTCTCTTGCAGGGGAAATTCCTCAAAACCTTGAAAAGCTTACAAATTTGGAGGTTCTCAATGTCTCACATAACCATTTATCTGGTCAAATCCCAAAGTCTTTGTCCAATATGCTCAGCCTTGTTTCAGTGGACTTTTCTTACAACAACTTGACTGGTGCAATCCCAACTGATGGTATTTTCCAAACAGCAAATGCTGAATATGAAGGGAACCCAGGTTTGTGTGGTAAGGTAAAAGGAATACATGCATGCACCACAAACACAAACAAATCTGGAGGAGTTAACAAAAGGGTTCTTCTTGGTGTTCTTATACCAGTTTGTGGATTACTACTGGGGCTGATATGTGTTGCAATCCTTGTATGCCGACGGCAACCCAAACTCAATGATGAAGAGTCCAGAAGTGCTCAAAATAATGATAAATCTTTCAGCATGGTGTGGGGAAAGGATGGACAATTCACATTCTCTGAACTTGTCAAGGCCACTGATGACTTCAATGACAAGTATTGCATTGGAAAGGGAGGATTTGGAAGTGTTTACAAGGCAGAATTACCTACAGGTCAAGTTGTTGCTGTCAAAAGGCTCAATGTCTCAGATTCCATTGACATTCCAGCAGCGAATCGCCAAAGCTTTGAGAACGAGATAAGAACTCTTACTGGTGTTAGGCACCGAAACATAATCAAGCTCTATGGTTTCTGCTCTAGGAGAAAACAGATGTTCTTGGTTTATGAATATGTAGTCAAAGGAAGCTTGAGAAAAGTGCTCTATGGAGAGGAAGGAACATTGGAGCTAAGCTGGCCCAAGAGAATGCAAGTTGTGCAGGGAATAGCACATGCGCTCGCCTACCTACACAGTGATTGTTACCCACCAGTTGTGCACAGAGATGTAACAATGAATAACATACTATTGGACTTGGACTTTGAACCCCGTCTCGCAGATTTCGGCACTGCAAAGCTTTTAAGCTCTGGAACTTCAAGTTGGACCTCAGTTGCTGGTTCTTATGGCTACATGGCTCCAGAGCTAGCACAAACAATGAGGGTCACTGACAAGTGTGATGTGTATAGTTTTGGAGTGGTAGTGTTGGAGATAATGATGGGAAAGCACCCTGGAGAACTCTTGACAAACCTGTCCTCAAACATGTCCTTGTCATCAATGGAAGATTCACAGGTGCTTCTGAGGGATGTGTTAGACCAGAGGCTGCCACCTCCAACAGGCCAGTTAGCTGAGGCAGTGGTGTTCACAGTGACCATAGCTTTGGCATGCACACGTTTGGCTCCAGAATCCAGACCCACAATGCGTTCTGTGGCACAAGAACTATCAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTGACATGATAACAATGAACAAGCTTACAGGGTTTCAGAAATAG 3615 0.4119 MTTFQFQHSILFQLILILISLLTLNTTASPKTEAEALVKWKNTLSHPLLSSLNSWSLTNFNKLCSWEAILCDKTNTTITQIDLSGFSLSGTLDALAFSSLPNLTHFNLSGNNFNGSLPSSMGTLSLSKLQYLSFHNNSFSGTIPYHLTSLPKVWYLDFGSNYFASGNWSQYSCLPSLTYLDLDLNSFTPEFPSFVLKCQSLTFLDLSQNTFNATIPESMFTNLSKLEYLNLTNCGLQGPLSSNLSKLTNLKELHMGNNMFTGPIPENIGLISSLQVLELYNISAHGAIPASLGQLKNLQHLDLRNNFLNSSIPSELGHCNNLTYLALAGNNLTGPLPLSLSNLTKLSELGLSENSFSGQVSASLISNWTKLTSLQIQNNNLTGNVPPEIGLLKRINYLYLYNNTLSGPIPVEIGNLKEMIELDLSGNHFSGKIPPTIWNLTNMKILNLFFNELSGTIPKDIGNLKSLQIFDVNNNKLDGELPDTIAQLTALKHFSVFSNRFSGNITRDFGKYSPNLDTIYLSNNTFSGELPPDLCNGAAVLTILAVNNNSFSGPLPKSLRNCSSLTRLRLDVNQLSGNITEAFGVYKSLEFISLSGNHLVGELSPKWGECGNITRMEMSKNKLSGKIPSELGKLSRLAYLRLDSNEFTGNIPPEMGNLAKLFMFNMSKNHMSGEVPQSLGRLANLNFLDLSDNNFIGSIPEELGNLQKLLSLNLSHNNLSGEIPSELGNLLALQILLDLSSNSLAGEIPQNLEKLTNLEVLNVSHNHLSGQIPKSLSNMLSLVSVDFSYNNLTGAIPTDGIFQTANAEYEGNPGLCGKVKGIHACTTNTNKSGGVNKRVLLGVLIPVCGLLLGLICVAILVCRRQPKLNDEESRSAQNNDKSFSMVWGKDGQFTFSELVKATDDFNDKYCIGKGGFGSVYKAELPTGQVVAVKRLNVSDSIDIPAANRQSFENEIRTLTGVRHRNIIKLYGFCSRRKQMFLVYEYVVKGSLRKVLYGEEGTLELSWPKRMQVVQGIAHALAYLHSDCYPPVVHRDVTMNNILLDLDFEPRLADFGTAKLLSSGTSSWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGELLTNLSSNMSLSSMEDSQVLLRDVLDQRLPPPTGQLAEAVVFTVTIALACTRLAPESRPTMRSVAQELSATTQACLSEPFDMITMNKLTGFQK 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30361g00008 1204 Gene3D Ribonuclease Inhibitor 415 485 IPR032675 -
Stsc30361g00008 1204 FunFam MDIS1-interacting receptor like kinase 2 172 365 - -
Stsc30361g00008 1204 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1031 1043 IPR008266 GO:0004672|GO:0006468
Stsc30361g00008 1204 FunFam MDIS1-interacting receptor like kinase 2 986 1185 - -
Stsc30361g00008 1204 FunFam Nuclear pore complex protein NUP107 30 168 - -
Stsc30361g00008 1204 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Stsc30361g00008 1204 FunFam Leucine-rich repeat receptor protein kinase MSP1 868 985 - -
Stsc30361g00008 1204 PANTHER LEUCINE RICH REPEAT KINASE 2 474 1186 - -
Stsc30361g00008 1204 Gene3D Ribonuclease Inhibitor 193 412 IPR032675 -
Stsc30361g00008 1204 Pfam Leucine Rich Repeat 757 778 IPR001611 GO:0005515
Stsc30361g00008 1204 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515
Stsc30361g00008 1204 Gene3D Transferase(Phosphotransferase) domain 1 987 1192 - -
Stsc30361g00008 1204 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Stsc30361g00008 1204 PRINTS Leucine-rich repeat signature 755 768 - -
Stsc30361g00008 1204 PRINTS Leucine-rich repeat signature 709 722 - -
Stsc30361g00008 1204 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 513 829 - -
Stsc30361g00008 1204 SMART LRR_typ_2 247 271 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 464 488 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 126 150 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 295 319 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 706 730 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 100 124 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 755 779 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 174 198 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 416 440 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 199 222 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 514 537 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 682 705 IPR003591 -
Stsc30361g00008 1204 SMART LRR_typ_2 634 658 IPR003591 -
Stsc30361g00008 1204 CDD STKc_IRAK 911 1179 - -
Stsc30361g00008 1204 ProSiteProfiles Protein kinase domain profile. 905 1192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30361g00008 1204 Gene3D Ribonuclease Inhibitor 486 828 IPR032675 -
Stsc30361g00008 1204 ProSitePatterns Protein kinases ATP-binding region signature. 911 933 IPR017441 GO:0005524
Stsc30361g00008 1204 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 412 509 - -
Stsc30361g00008 1204 SUPERFAMILY RNI-like 288 601 - -
Stsc30361g00008 1204 Pfam Leucine rich repeat 175 236 IPR001611 GO:0005515
Stsc30361g00008 1204 ProSiteProfiles Leucine-rich repeat profile. 684 707 IPR001611 GO:0005515
Stsc30361g00008 1204 SUPERFAMILY L domain-like 540 804 - -
Stsc30361g00008 1204 SUPERFAMILY Protein kinase-like (PK-like) 884 1179 IPR011009 -
Stsc30361g00008 1204 Pfam Leucine Rich repeat 706 722 IPR001611 GO:0005515
Stsc30361g00008 1204 Gene3D Phosphorylase Kinase; domain 1 867 985 - -
Stsc30361g00008 1204 Pfam Protein kinase domain 907 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30361g00008 1204 SUPERFAMILY L domain-like 49 383 - -
Stsc30361g00008 1204 Pfam Leucine rich repeat N-terminal domain 31 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30361g00008 Stsc-Chr30361 51582 55614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30361g00008 12 628 Receptor kinase-like Gene Family AT4G08850 29.790 1.39e-71 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30361g00008 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30361g00008 - - gmx:100809137 1665.97