Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30359g00013 ATGGCTAATCTTATCTTTTTCATTGCTCTGTTGGTATTCTTCATACCTATTTCAGCTGCTTCCTTATCTGATGCTTGGTTATCTGATGCTAATGCAACATTCTATGGTGACATGTATGGTGGAGGAACCATGCAGGGTGCATGTGGCTATGGTGATCTCTTCAAGCAAGGTTATGGTCTTGAGACCACAGCGCTAAGCACTGCCCTATTCCATGATGGTTATACATGTGGAGCATGTTTTGAGATTGTTTGTAGGAACCTGCCCAATTGGAGGTATTGCAATAGAGGTTCAATAATAGTAACTGCAACAAACTTCTGTCCGCCAAATTTAGGAGAGGGAACTGGTCATTGGTGCAACCCTCCATATAAACACTTCGATTTATCAATGAAGATGTTCACAACCATAGCAGAATATAGAGCAGGGATTGTACCAATTTATTATAGAAGAGTTCCATGCCATAAAATAGGTGGTGTCAAGTTTGAGTTGAAAGGGAATGCTTATTGGTTTATGGTGTTGGTGTACAATGTTGGTAATGCTGGTGATGTTTTTGGTGTTAGAATCAAAGGCTCAAACACTGGGTGGCTTACTATGTCAAAGAATTGGGGTCAAAATTGGAATATTGGGGTTAACTTGGTTGGACAAAGTTTGTCATTTATGGTCACAACTAGTGATGGGAAAACCTTGGAGTTTGATGATGTTGCTCCTTCTAATTGGCAATTTGGACTATCTTATGAGGGCAAATATAATTTTTAG 753 0.3958 MANLIFFIALLVFFIPISAASLSDAWLSDANATFYGDMYGGGTMQGACGYGDLFKQGYGLETTALSTALFHDGYTCGACFEIVCRNLPNWRYCNRGSIIVTATNFCPPNLGEGTGHWCNPPYKHFDLSMKMFTTIAEYRAGIVPIYYRRVPCHKIGGVKFELKGNAYWFMVLVYNVGNAGDVFGVRIKGSNTGWLTMSKNWGQNWNIGVNLVGQSLSFMVTTSDGKTLEFDDVAPSNWQFGLSYEGKYNF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30359g00013 250 SMART dpbb_1 62 147 IPR007112 -
Stsc30359g00013 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Stsc30359g00013 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Stsc30359g00013 250 Gene3D - 157 250 IPR036749 -
Stsc30359g00013 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Stsc30359g00013 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Stsc30359g00013 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Stsc30359g00013 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Stsc30359g00013 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Stsc30359g00013 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Stsc30359g00013 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Stsc30359g00013 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Stsc30359g00013 250 CDD DPBB_EXPA_N 28 152 - -
Stsc30359g00013 250 SUPERFAMILY PHL pollen allergen 156 246 IPR036749 -
Stsc30359g00013 250 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Stsc30359g00013 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Stsc30359g00013 250 Gene3D - 16 153 IPR036908 -
Stsc30359g00013 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Stsc30359g00013 250 PANTHER EXPANSIN-A15 5 247 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30359g00013 Stsc-Chr30359 45004 46573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30359g00013 12 250 Expansin Gene Family AT5G39280 61.925 8.87e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30359g00013 - - tcc:18601628 344.354