Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30359g00007 ATGGCACTGATTATGCTTCATGGGACTCTCCATGCTACGATTTACGAGGTTGATAAAATCAGTGGTGCCTCGGGTGGAAATTTTTTGACCATGATCAGGCAAAATATTGAGGAGACTGTTGGTATTGGAAAGGGAGCTCCAAAAATCTATGCAACTGTTGATTTAGAGAAAGCAAGAGTGGGAAGAACAAGGAAAATACTGAATGATAATAATCCAAAATGGAATGAGTCTTTTCACGTCTATTGTGCCCATTTGGCTTCAAATATTATCTTCACTGTGAAAGATGATAATCCTATTGGGGCGACGCTGATCGGAAGAGCATATGTGCCTGTGGAGGAGATCTTGCAGGGTGAGGAAGTTGATAAATGGGTTGAGATATTGGATACAAAGAAAAAACCAGTAGCAGATGGTTCAAAGATCCATGTGAGGCTGCAATATTTCGATGTTAGGAAAGACCGATGCTGGGGTCGGGGAATCATGAGTCCTAAATATCCTGGAGTTCCCTTTACCTTCTTCTCACAAAGACAAGGATGTAGGGTATCTCTTTACCAAGATGCTCATGTGCCGGAAAACTTTATCCCGAAAATTCCACTTGCTGGAGGCAAGACTTATGAGCCTCATAGGTGCTGGGAGGATATTTTCGATGCAATCACGAAAGCAAAACACTTGATATATATTACTGGTTGGTCTGTTTATACCGAGATCTCCTTGGTAAGGGATTCTAGGAGGCCAAAGGAAGGTGGAGATTCAACACTCGGCGAGCTTCTTAAGAAGAAGGCGAGCGAAGGTGTTAAGGTCTTGATGCTTGTTTGGGACGATAGAACATCGGTTGGTTTGTTAAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACATTAAATTTCTTCTCTAACACTCAAGTGAACTGTTGTTTATGCCCCCGAAATCCTGATGATGGAGGTAGCATTATTCAGAGTTTCCAAGTTTCTACCATGTTTACTCATCACCAGAAGATTGTTGTTGTGGACAGTGAGATGCCGGGTAAAGGATCACATATGCGAAAAATAATGAGTTTCGTTGGGGGTATTGATCTTTGTGATGGAAGATATGATACAGCATTCCACTCACTCTTCAGAACCTTAGACACAGCTCATCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGATATCACCAAAGGTGGTCCTAGGGAGCCTTGGCATGATATCCACTGTCGGCTCGAAGGGCCAATAGCTTGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAGGCAAGGTGGAAAGGATGTACTTGTCCATCTCAGAGAGCTCGAAAATTCCATTATTCCCCCATCCGCGGTAATGTTCCCTGAAGATCATGAAACATGGAATGTTCAGTTATTCAGATCAATTGATGGTGGGGCTGCTTTCGGTTTCCCTGATAATCCTGAAGATGCTGCGAAAGTAGGCCTTGTTAGTGGGAAGGATAACATCATAGACCGAAGTATTCAAGATGCTTATATCCATGCAATTCGACGAGCAAAGAAGTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTATAACTGGAAGCCTGAAGATATTAAGCCGGAAGATATCGGCGCTCTGCATCTAATTCCAAGGGAGCTTTCGCTTAAGATCGTTAGTAAGATCGAAGCCGGGGAACAATTTGCTGTGTATGTTGTAGTCCCAATGTGGCCAGAAGCACTCAAAGCCAAGGGTATTGAGGACGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAATAGAGAGGTGAAGAAAGAAGGAGAGTATGAGCCTTCTCAAAAACCAGAACCTGGTACGGATTATGAGAATGCCCAAAAGTCGCGGCGCTTCATGATTTATGTTCATACCAAGATGATGATTGTTGATGATGAATACATCATTGTGGGATCTGCCAACATAAACCAAAGATCAATGGACGGCGCGAGGGACTCCGAAATTGCAATGGGAGCTTACCAGCCTTACCACTTGGCTACCAGGCAGCCGGCGCGCGGCCAGGTCCATGGTTTCCGAATGGCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCATTCCTCAGGCCAGAAAGCAAAGAATGTATCAAAAGGGTGAACACAATTGCTGACAAGTATTGGGAGCTCTTCTCTAAGGAGTCACTTGAGAATGACCTTCCCGGCCACCTGCTCCGCTACCCGATCAGCATTGCCGGCGAGGGACATATCACGTCGCTTCCAGGATTCGAATGCTTCCCCGACACGAAGGCGAAAGTTCTTGGCGCCAAAGCAGATTACCTGCCCCCTATCCTTACTACTTAG 2340 0.4432 MALIMLHGTLHATIYEVDKISGASGGNFLTMIRQNIEETVGIGKGAPKIYATVDLEKARVGRTRKILNDNNPKWNESFHVYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEILQGEEVDKWVEILDTKKKPVADGSKIHVRLQYFDVRKDRCWGRGIMSPKYPGVPFTFFSQRQGCRVSLYQDAHVPENFIPKIPLAGGKTYEPHRCWEDIFDAITKAKHLIYITGWSVYTEISLVRDSRRPKEGGDSTLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETLNFFSNTQVNCCLCPRNPDDGGSIIQSFQVSTMFTHHQKIVVVDSEMPGKGSHMRKIMSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADITKGGPREPWHDIHCRLEGPIAWDVLFNFEQRWRRQGGKDVLVHLRELENSIIPPSAVMFPEDHETWNVQLFRSIDGGAAFGFPDNPEDAAKVGLVSGKDNIIDRSIQDAYIHAIRRAKKFIYIENQYFLGSSYNWKPEDIKPEDIGALHLIPRELSLKIVSKIEAGEQFAVYVVVPMWPEALKAKGIEDDPRNYLTFFCLGNREVKKEGEYEPSQKPEPGTDYENAQKSRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQVHGFRMALWYEHLGMLHDSFLRPESKECIKRVNTIADKYWELFSKESLENDLPGHLLRYPISIAGEGHITSLPGFECFPDTKAKVLGAKADYLPPILTT 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30359g00007 779 Gene3D Endonuclease Chain A 471 669 - -
Stsc30359g00007 779 SUPERFAMILY Phospholipase D/nuclease 153 441 - -
Stsc30359g00007 779 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Stsc30359g00007 779 Pfam PLD-like domain 504 661 IPR025202 -
Stsc30359g00007 779 SMART C2_3c 9 123 IPR000008 -
Stsc30359g00007 779 Pfam C2 domain 41 126 IPR000008 -
Stsc30359g00007 779 SMART pld_4 625 652 IPR001736 GO:0003824
Stsc30359g00007 779 SMART pld_4 325 363 IPR001736 GO:0003824
Stsc30359g00007 779 Pfam Phospholipase D C terminal 698 769 IPR024632 -
Stsc30359g00007 779 Gene3D Endonuclease Chain A 199 444 - -
Stsc30359g00007 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Stsc30359g00007 779 CDD C2_plant_PLD 2 147 - -
Stsc30359g00007 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 625 652 IPR001736 GO:0003824
Stsc30359g00007 779 Gene3D C2 domain 7 154 IPR035892 -
Stsc30359g00007 779 PANTHER PHOSPHOLIPASE D 4 575 IPR015679 -
Stsc30359g00007 779 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Stsc30359g00007 779 FunFam Phospholipase D delta 200 443 - -
Stsc30359g00007 779 SUPERFAMILY Phospholipase D/nuclease 451 709 - -
Stsc30359g00007 779 PIRSF PLD_plant 1 578 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc30359g00007 779 PIRSF PLD_plant 573 779 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc30359g00007 779 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30359g00007 Stsc-Chr30359 20850 24463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30359g00007 1 779 Phospholipase D Gene Family (Wang group) AT1G52570 75.926 0.0 1296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30359g00007 K01115 - gmx:100786410 1368.21