Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30358g00006 ATGACTTCTTCCAAAAAACATGTTGTGAACACCATAGAAGATATCACCCTTTGTAGAATTTCTGAACAATGTATTGATTCTGTTAAAAGAAGGCGAAGTTCAATCATAGTCCCTATTGGTTCTGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTTTTCAAGTATTTATGTGATCACATGGAGCCAGCAGTGCCTTGTGAGCTTGTCAGGGGTTACTTGGACTTCTCCCCACATGCATGGAATATCATTCTGATTAAGAAGGGTGGTACGTGGGTACGAATGCTGGTTGACGCTTGTCGACCCCATGACATAAGAGAAGAGAAGAATCCTGAATACTTTTGCAGGTATATACCTCTAAGTCGAGCCACAATTCCCCTTTCAACTAATGGAAGTCATGGTCCTGATCGGTTGTTTCCATCTCTCTCTACTTGTGATGAACATGAGAAAAAAGCTTCGACTACTTTAGTTCGGTGCAAAATTGGGGCAGTTGAGGCTGCAGCTAAGGTGCGTACTTTGGATGTGCAGGGAAGTTCACCAACCGAAATTAGAAATTTTGATTATAATTGTTTGGGAGAAATTAGAATTCTAGGTTGTTTAAAACATCCCTGCATAGTGGAAATGTATGGACATGAAATATCGAGCCAATGGACTTTCACAGCTGATGGCAAGCCTTGCAATCGCATATTAAGATCTGCAATTTTTATGGAGTATGTTGATGGTGGTTCCTTAAAGAACTATTTAGAAAAGCTATCAGAAGCTGGCGAAAAACATGTCCCTGCGGAATTGGCTTTGCATATCGCCAGAGATGTCTCCTGTGCCTTGTCGGAGCTGCACTCAAAGCACATAATTCATCGGGACATTAAAAGTGAAAACATCCTGTTTGATTTGGATAGAAAGACTGATGATGGAACTCCCACTGTGAAGTTGTGTGATTTTGACAGTGCAGTGCCACTAAGATCACCTTTGCATGCTTGCTGTATTGCTCATGTGGGAACTCCACCTCCTTGTGTATGTGTTGGAACACCACGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATGAAAAGTGCGCTTATGGATTGGAAGCTGATATTTGGTCTTTTGGATGTTTACTTTTGGAGATGCTGACTCTGCAAATTCCATATTATGGAGTACCTGATTCAGACGTCCATGACAATCTGCAGATGGGTAAACGACCCCGATTAATAGATGAGCTGGAGGCATTGAGTCCAATGAGTGAACCCTCCGTAATTCAATCTGGCGAAGACCTGGAAAAATCAGATACAGAGGCAGACTTGTTGAAATTCCTTGTTGAGTTATTTCATAGATGCATGGAAGAAAATCCTGCAGATCGTCCTACAGCTAAAGAAATCCATGAAATGCTGCTTGCGCGCACAGACCGCTTACAAGCACAAGATACAGAATAA 1431 0.4221 MTSSKKHVVNTIEDITLCRISEQCIDSVKRRRSSIIVPIGSVQYGVCRHRALLFKYLCDHMEPAVPCELVRGYLDFSPHAWNIILIKKGGTWVRMLVDACRPHDIREEKNPEYFCRYIPLSRATIPLSTNGSHGPDRLFPSLSTCDEHEKKASTTLVRCKIGAVEAAAKVRTLDVQGSSPTEIRNFDYNCLGEIRILGCLKHPCIVEMYGHEISSQWTFTADGKPCNRILRSAIFMEYVDGGSLKNYLEKLSEAGEKHVPAELALHIARDVSCALSELHSKHIIHRDIKSENILFDLDRKTDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYEKCAYGLEADIWSFGCLLLEMLTLQIPYYGVPDSDVHDNLQMGKRPRLIDELEALSPMSEPSVIQSGEDLEKSDTEADLLKFLVELFHRCMEENPADRPTAKEIHEMLLARTDRLQAQDTE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30358g00006 476 SUPERFAMILY Protein kinase-like (PK-like) 186 464 IPR011009 -
Stsc30358g00006 476 Pfam Ethylene-responsive protein kinase Le-CTR1 17 98 - -
Stsc30358g00006 476 SUPERFAMILY Cysteine proteinases 43 101 IPR038765 -
Stsc30358g00006 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Stsc30358g00006 476 SMART serkin_6 146 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30358g00006 476 Pfam Protein kinase domain 187 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30358g00006 476 ProSiteProfiles Protein kinase domain profile. 122 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30358g00006 476 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 28 469 - -
Stsc30358g00006 476 FunFam Leucine-rich repeat protein kinase family protein 188 469 - -
Stsc30358g00006 476 Gene3D Transferase(Phosphotransferase) domain 1 151 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30358g00006 Stsc-Chr30358 56408 59779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30358g00006 193 467 MAP Kinase Kinase Kinase AT1G63700 28.727 2.37e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Stsc30358g00006 Pkinase 7.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30358g00006 - - gmx:100819959 788.489