Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30356g00003 ATGGAGTTCCTCACAAGCCTTGCAACTGAAGCTGTCTCGAAGTTAGGAACATTAGTGGTGGGTGCCACTGTTGAGCAATTCAAATACATAATCAGCCACAAGAAGATTGTTGCGGATTTGAAGGAGGAGCATGCAAAATTGAAAATGATGAAGACAGCATTGGAAAGGCTAGTTGAGGAAGATAGAAGTCGTGGGCTTGAGATTACCGAGGATGTGAAAGGCTGGCTCGAAAAGGTGCAAGACATTGATGCTAAGTTGGAGAGGATCTATGCAGAGGAAGATGAAGCCAACAAGAAAAAGAGATGCTCAAATTTGGCATCCAAATATTCTTTGGGGAAGCGAGCAACAAAAAATGCAAGGAATATTGAAGGCCTAATAAAGGAGAAAGAGGGAAAATACAATTCCATTATTTCCCTTCCGAAATCTCCTCCAAAGTATGGTTCTTTGTACACACAAGACATCAAAGCCCTGGGTTCCAGAAAAGAAATTCTGAAGAAGGTGATGGAGAAGCTGAAAGAGGATAAGGTTAAAAGGATTAGTGTTTGTGGATTGGGTGGCGTCGGAAAAACCACACTGGCAAAGGAAGTGATAGAAAACATTGAGACAAGTAAGCTGTTTGATAAGTTTGCATTTGCAGCAGTGTCCCAAGATCCAGATTATGAGAAGATCCAAATGGAGATTGCAGAAATGTTACACTACAACTTCCAAGGGAAGACTATGCAGGTCAAAGCAGCTGAATTGTATAGGCATGTGACTAGTGAAGCTAAAAGTGTGCTAATAGTGCTAGATGATATCTGGCATGATCTTGATTTTGAGCTCCTTGGTCTTCCTTCTCTTGAGCAACAACAAGGCTGCAAATTCTTATTCACATCACGTGATAAGAAAGTGTGTCAAAGCATGAAATGTGATCAAGAGAATATCATTGACGTTCCTGTCTTGCCTGAACCTGAAGATTGGCATCTTTTCCGGGAGATGGCAGGCGATGTTGTGGACAAAGCTGACATAAAGAACACTGCAAAAGAGATTGCAATGGAATGTGGAGGATTGCCTCTTGCTCTGGTGGTTGTTGCAAGAGCACTTGCAAATGAAGAGGACAAGCATGCTTGGATTGATGCACATAAGCAACTAAGAGGATCCCCGCTGTCTTCTTTCCCAGATATGCAAAAGCTGGTGTACTCGCGCATCGAGAAGAGTGTTAACTTTCTTGGGAGCGAAGAGCATAAATGGTGCCTTTGGCTGTGTGGCTTGTATCCTGAAGACTTCGACATTCCTGTCGAGAGTTTACTGCGTCATGGGATGGGGATGGGAATGTTTAAAGTGAATGGTGCGCTGTGCGAAGCAAGAAATCATGTGCATACTTTGATACTACATCTCAAGAGGTGCTTTCTGTTGCTGGACAATGGCAAACCAGGGTGTGTGAAGATGCATGATGTGGTCCGTGATGTTGTCATTTCAATTGCATCTAAAGTTGAAAATGGCTTCCTGATACAATACAATGCTAAATTAAAGAGCACTGAAGAAAGGAAACTGGATCATGTTAAAGCAATATCTCTTGTTCTGGATGACACAAAGGAGTTGGAGAGTGACTCAGAGTATCCAGCACTTCAACTTTTGCAAGTTCGTTCAAAGAGCAAGGAACCCAATCCGTGGCCAGAGCATTTCTTCCAAGGCATGAGCAAGCTCAAAGTCTTAGATGATGGAGAGCATTCATTTGCAAACTTGAAAGATCTAAGGATAGATTCATGCCCCAATCTGGAATATATTTTCTATGGCAATTGTGCATCCAATGCCTACTCACATATCCAGTCACTTTCTCTAAAGAGTCTACCAAATTTAAGGGAGATATGCAATGTAGTTGATCATCACGGCAACAAATTGATGATTCAGTTTTCACACTTGGTTAAACTGGAGTTGAGATACTTGCCGAGCTTTAATGGCTTCAGTAAAGGCAATGATACGGATGAAGTCACTCAACCAACTCATAATCATGAACTTGGATTGGTAAACGCCAATACATCATCAGAGATCAAAAGTGTTGCATCCCACTCGGAATCAAGTGCTGATAAATTTCTGCCGATTACAAGCAAGTTGTTTACTTGTAGATGGCTGCATCATCACTTCCCAAAATTGGAAACAATCTTGTTAGTGTCGACGTGTCAATCTTTGGAGATGGTGTTTGACTTGCAGGGATGCTCATCACAGTTGAATCACTTATTTCCTCAATTGAAAAATATCCAGATATCATACCTCAGCAGTTTGATTCATGTGTGGGGTAATGCTCCAACCTGTGTCTATGGCTTTCAAAATGTGAGGTCTTTATCAATCTCAGATTGCAACTCTTTAAGATATGCATTTACTCCTGCCATTGTAAAAGCAATGACAAAGCTTGAGAATCTAGAGGTGAAGCGTTGTGAGTTGATGGAGAGTTTAGTGGGCGATGATGAACATGAAGAAGGTGAAGACTATAAAGTTAGTGGGGAGGTGAAAATCATCAGTTTTGAGGCACTACATTCCCTCATATTATGGTACCTCCCAAATATTGCAAGCATTTGTCCGTCATCTTGGGAGTTGGAATTGCCATCAATAAGAAAGTTCCAAATATATGAGTGCCCAAAGCTGCGAATATCCTCTTTACTAACTTCTCATCATCAAGTGGATGAAAAGCTTCACAATAATGTCTCTAATGCTTCTGATGATACTCATTTTGAAAAAAACCACCCAAGGAGGTGGTATTTTGGTTGTACATCATTTTGTTCCAATTTGATTCCTTATAAAAACACAAGTGAGAAAAGTCCCAAGGTTAATGATTATGTCCCTTCCAATTCTGAAAGGAAATTAGAAATGAGTCGTATGCCTCGTCTTGAAGAACTTGATATAAGCAACTGTGAATTGCATGACAAAGTGCTCTTGCAAGATGGAGATCATCAGAGGATTAGGAATTTTCCAGCCCTAAATGGCTACTTGTTTCAAAAGTTAACATCTCTGAACATGGTAGGTTGCAATAATATCATTGCCTTGTTATCTCTTTCACCATTGAGAACTCTTGAGTGTCTCGAAAATCTAGAAGTGAAGTATTGCGAGAATGTAGAACAAATTATATCTCACGAAGAATTAGAAACAAGTGAAAACAAGTTGATGCTCCCTAAATTACAGTATTTAATTCTTCAGCACTTGCCAAACCTGAAGGCCTTTTGCCAAAGTTCTTGTCTTTTGGATTTTCCATCATTGAGAAAACTAGAAATTGACTATTGCCCCAAAATTGAAGTGTTTTCTCGAGGAAGTTGCCACACACCCAAGCTTGAAGATGTCCAAATCACCGGACCACATGGTAGCAACCATATACAAAATGGTGACTTGAATGCTACTATCCAAGGATTTAAAGCCTTTGAGGCGTTACATGAATCAGAAACCCCAAGATGGAACCTTCTATGCAATGAACACAAATTCAGTTACTTGACAGAATTAGCCATCAAAAAGTTTCATAAAATGGCTGTGTTGTCTCCTTCCAACGAGATACACGCCCTTCACCATTTGAGGGAACTCAACGTCCAACACTGTGATTCATTGGTTGAGCTCTTTGAATCTGAAAGAGGAATGGTTGCAAAAAATGCATATGAAATCACTTATAAACTACAAAGCTTGGAGTTGATAGATTTACCCAAACTAAGGCACATTTGGTTACCAAATATTGTGAGGCTCGTAAGCTTTAAGATGCTGACATCAATCAGAGTTATTGGATGTGGCAGTTTAAAGAGTGTGCTCTCTGAGTCAATGGCTATAAGCCTTGTGCAACTTCAAGAACTGGATGTTTCTAGGTGTGAGATGATGGAGGAGATAGTCACAATGGATGATGGAGGCAATCAATTCAAGACTTTGCTTCCCAACTTGGTGTGGTTGGAACTATCTGATTTGCCAAAGCTGGAATGTGTTTGTTCAAGAATTCATCACGAATATGATATCCTCTTCTGTGATGATGACAAAGACGACAAGGGAATCTGTCATCTTAATGATAGTAGTAAGCAACAAATTGAGGTCTCTTTTCCACAATTAAATTATTTGTCTCTGGACCAAGTCCCTAGGCTCAAGTGCTTTTGTCCCGGAGCATATGATTATGACATCATGGTCGATGAAGATACACAGATAACAAATTTTCCCAATCATAATGTTGCTGTTGCTGTAACTGTGACCACACCTAAACTTGATACGGTGTTTTCATCATTTGGTTCAATGCGCATAGCAGGGGAAAGGGATGTTAATCTGACAATACATTATCTTGTAAATAGAATGAAATACAAGGAGGAGCTGCAACAATTAGAGACATTCAGATGTATTATTGAGCAACACCAATATCAACACTTGCTGGGCTACATCACCAGGGAGCCAAAACTTGAAGTTGAGAGGTGTCACAAGCTGTTAACTTGTGTCCCATCAAACATGATGCACTTATTCCAACATGTGAAAATACTCAAGGTAGAACAATGTGAGTGCTTGCAAGAGATATTCGAATCAAATGATTATGGTGTTCAAGGGACACAATTGGAGTTGCAACACATTTGGAGAAATCATGCCTCCATTTCAGGGTTCGAGTATTTGAAGTATCTAAGAATCAGAGAATGCCATGAGTTGACATATGTGTTTCGTGATGTTTCTGTAGCCAGAAGCCTTCCACAACTCTATCTTCTTGAAGTGGTGAAATGCAACAAGATGAAAGAGATCATCAGCCCCAACAACAATTATTCCATACAAAAAAAGAGGTCCAAGATCATATTCCCGAGGTTAGAGTTTATTAAACTTGAAAAGCTGAGCTCACTTAGTTGTTTCTGCCCAAGCTATTTGCATTTTGAGCTACCAGGGTGTGCTTCTATAACAATTGAAGAATGCCCAAAGATGGAGACCTTCTGTTTTGGAACAGTATACACACCATATGCAGAGTCAATAAAGGTGGAAGGACGAAAGTTCGGCAGAAAGGAAGATGTGAATGAGGCGATAAAAGAGATACGTGCAACAATGTAA 5013 0.4014 MEFLTSLATEAVSKLGTLVVGATVEQFKYIISHKKIVADLKEEHAKLKMMKTALERLVEEDRSRGLEITEDVKGWLEKVQDIDAKLERIYAEEDEANKKKRCSNLASKYSLGKRATKNARNIEGLIKEKEGKYNSIISLPKSPPKYGSLYTQDIKALGSRKEILKKVMEKLKEDKVKRISVCGLGGVGKTTLAKEVIENIETSKLFDKFAFAAVSQDPDYEKIQMEIAEMLHYNFQGKTMQVKAAELYRHVTSEAKSVLIVLDDIWHDLDFELLGLPSLEQQQGCKFLFTSRDKKVCQSMKCDQENIIDVPVLPEPEDWHLFREMAGDVVDKADIKNTAKEIAMECGGLPLALVVVARALANEEDKHAWIDAHKQLRGSPLSSFPDMQKLVYSRIEKSVNFLGSEEHKWCLWLCGLYPEDFDIPVESLLRHGMGMGMFKVNGALCEARNHVHTLILHLKRCFLLLDNGKPGCVKMHDVVRDVVISIASKVENGFLIQYNAKLKSTEERKLDHVKAISLVLDDTKELESDSEYPALQLLQVRSKSKEPNPWPEHFFQGMSKLKVLDDGEHSFANLKDLRIDSCPNLEYIFYGNCASNAYSHIQSLSLKSLPNLREICNVVDHHGNKLMIQFSHLVKLELRYLPSFNGFSKGNDTDEVTQPTHNHELGLVNANTSSEIKSVASHSESSADKFLPITSKLFTCRWLHHHFPKLETILLVSTCQSLEMVFDLQGCSSQLNHLFPQLKNIQISYLSSLIHVWGNAPTCVYGFQNVRSLSISDCNSLRYAFTPAIVKAMTKLENLEVKRCELMESLVGDDEHEEGEDYKVSGEVKIISFEALHSLILWYLPNIASICPSSWELELPSIRKFQIYECPKLRISSLLTSHHQVDEKLHNNVSNASDDTHFEKNHPRRWYFGCTSFCSNLIPYKNTSEKSPKVNDYVPSNSERKLEMSRMPRLEELDISNCELHDKVLLQDGDHQRIRNFPALNGYLFQKLTSLNMVGCNNIIALLSLSPLRTLECLENLEVKYCENVEQIISHEELETSENKLMLPKLQYLILQHLPNLKAFCQSSCLLDFPSLRKLEIDYCPKIEVFSRGSCHTPKLEDVQITGPHGSNHIQNGDLNATIQGFKAFEALHESETPRWNLLCNEHKFSYLTELAIKKFHKMAVLSPSNEIHALHHLRELNVQHCDSLVELFESERGMVAKNAYEITYKLQSLELIDLPKLRHIWLPNIVRLVSFKMLTSIRVIGCGSLKSVLSESMAISLVQLQELDVSRCEMMEEIVTMDDGGNQFKTLLPNLVWLELSDLPKLECVCSRIHHEYDILFCDDDKDDKGICHLNDSSKQQIEVSFPQLNYLSLDQVPRLKCFCPGAYDYDIMVDEDTQITNFPNHNVAVAVTVTTPKLDTVFSSFGSMRIAGERDVNLTIHYLVNRMKYKEELQQLETFRCIIEQHQYQHLLGYITREPKLEVERCHKLLTCVPSNMMHLFQHVKILKVEQCECLQEIFESNDYGVQGTQLELQHIWRNHASISGFEYLKYLRIRECHELTYVFRDVSVARSLPQLYLLEVVKCNKMKEIISPNNNYSIQKKRSKIIFPRLEFIKLEKLSSLSCFCPSYLHFELPGCASITIEECPKMETFCFGTVYTPYAESIKVEGRKFGRKEDVNEAIKEIRATM 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30356g00003 1670 Coils Coil 1656 1670 - -
Stsc30356g00003 1670 Pfam NB-ARC domain 161 400 IPR002182 GO:0043531
Stsc30356g00003 1670 Gene3D Ribonuclease Inhibitor 1115 1386 IPR032675 -
Stsc30356g00003 1670 Gene3D Ribonuclease Inhibitor 916 1114 IPR032675 -
Stsc30356g00003 1670 Gene3D Ribonuclease Inhibitor 1469 1639 IPR032675 -
Stsc30356g00003 1670 Gene3D Ribonuclease Inhibitor 548 878 IPR032675 -
Stsc30356g00003 1670 Coils Coil 37 60 - -
Stsc30356g00003 1670 Coils Coil 79 99 - -
Stsc30356g00003 1670 PRINTS Disease resistance protein signature 949 965 - -
Stsc30356g00003 1670 PRINTS Disease resistance protein signature 178 193 - -
Stsc30356g00003 1670 PRINTS Disease resistance protein signature 346 360 - -
Stsc30356g00003 1670 PRINTS Disease resistance protein signature 252 266 - -
Stsc30356g00003 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 414 IPR027417 -
Stsc30356g00003 1670 SUPERFAMILY L domain-like 470 881 - -
Stsc30356g00003 1670 Gene3D - 313 402 IPR042197 -
Stsc30356g00003 1670 Gene3D - 148 310 IPR027417 -
Stsc30356g00003 1670 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1514 1634 - -
Stsc30356g00003 1670 Coils Coil 154 174 - -
Stsc30356g00003 1670 FunFam Probable disease resistance protein At1g61300 145 305 - -
Stsc30356g00003 1670 SUPERFAMILY RNI-like 948 1308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30356g00003 Stsc-Chr30356 12122 21434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30356g00003 176 640 WRKY Transcription Factor Family AT5G45050 24.587 4.28e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30356g00003 - - mtr:11412360 744.577