Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30355g00001 ATGGCTGTGGTGAGTCCTGTGCCTGCAACAACACAAAGGATGGGTTCTGGGAGGCCAGTTCATGAAATTGGGGTCAGTAGTGGTGAAATTGTTGAGGAGCCTAATCAAGCTGTGGTAGTTGACCAACCAATCTATATTGCTGTCTCAAAAGAAGTGAAAGAGAGCAAGGTGAATCTGATATGGGCTATTCAGAACTCTGGAGGGAGGAGGATTTGCATACTTCATGTTCATGTTCCTGCAACCAAGATCCCTTTGCCTGAAATGGGTGCTAAGTTCCCTCCAAGTTCACTGAAAGAGGAGCAGGTTCGAGCATACCGGGATAAAGAAAAGCAAACCATGGATAAGACACTGGAGGAGTATCTCGGTATATGTCAACGGATGGGGACGCGGGCAGAGAAAGTGCATATTGAAATGGAAAACATTGAACAAGGAATTTTAGAACTTGTCTCCCGACACCGCATCCAAAGGCTTGTCATGGGAGCAGCATCCGACCGATCCTATTCTAGGAGAATGATGGACCTGAGATCTAAGAAAGCCATCTTTGTACGTGATCAAGCTCCACCTTTTTGTCATGTACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTCGGGTGAAGATAATTTAGTTGCACCTCCTTTGGTGCAGCAAGTGCCAAACTCTGCTGCTGAACGTCCAGTACTCCCGAGATCTCAGTCTGTTGTTACTTTGGGGCAAAATCAAACTAGTCATTGTCGGGAGTTATTTCGCAAAGTAAAATCTAGCAATGATGGTCATGTAGGGAGCATTATGCCTGATTCTTCTCCAGATAACTCTGAAGGGTTCTCAACTCCACTAAATAGGATAGGTACCGATATAAGTTCTGATGAGTCAGATCGGCTGTCAAGGACAAGGAGTCCTTCAGCTTTGTCAGTTTGCTCCGACAGTAGTGCTGTGGACCCAACGATGACCCCAAATTCGATTAGTGAGATTACCGAGAACGTAGCAGAGTTGTCTTTGAGCCACGTGATCAAGGAGGATCTTCATCATTCTTCTCCTCCTAGTGTACTGCAGGATGGAGGAATGAATGATACTATATATGACCAACTTGAATTGGCTATGGCTGAGGCCGAGAGAGCCACACGAAACGCATATCAAGAAACATATAGGCGTGGGAAAGCTGAAAAGGAGGCCATTGAAGCTATGCGGAAGGCTAAAGCCTCCGAAAGTTCATATTTGGAGGAGTTGAATCTGAGGAAAAGGGCCGAGGAAGAACTGCAAAAAGAAAAAGAACAACTTGAAAGCATGAAGATCCAAAGAGACAAGGTTAAGGAAGAACTCCAACTTGCCCTAGATCAGAAGTCATCACTGGAGAGTCAAATTGCGTCATCCGAACTTATGATAAAGGAGTATGAGCAGAAGATTATTTCTGCCGTGGATCTGTTACAAAGCTACAAGAAAGAACGGGACGAGTTGCAGGTGCAGCGTGATGATGCACTGAGAGAGGCCACAGAGTTGAGAAAAAAACAAGGAGAGGCCTCTGGCATGCACACACCTCCATTGTTCTCGGAGTTCTCCTTCTTTGAGGTCAAACAAGCAACAAATAACTTCGATCAATCCCGAAAGATAGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATGTTGCGTCACTCTGAGGTGGCTATAAAGATGTTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTGTTGAGCAAGTTAAGGCATCCAAATCTTATCACGCTTGTTGGAGCCTGCCCAGAATCCTTTACCCTTATCTATGAGTATTTACCGAATGGGAGCCTTGAAGACCGTCTCGTTTGCAAGGATAACACACCTCCGTTGTCATGGCAAACTCGGATTCGCATTGCTGCAGAACTTTGTTCCGCTCTCATCTTCCTTCACTCAAGTAAACCGCACAGCATAGTGCATGGTGACTTGAAACCCTCTAACATTCTCCTGGATGCAAACCTTGTGAGCAAGCTCAGCGACTTTGGAATCTGCCGCATATTATCTCGTCGTGAGGGTTCAGCTGATAACACTACGGAGTGGAGACCGGCCTTGGGAATAACAAAGGAAGTGTCCTATGCATTGGAAACCGGAAAACTGAAATCCCTGTTGGATCCTTTAGCCGGAGACTGGCCATTCGTGCAAGCCGAACAATTGTCTCGCCTGGCCATGAGGTGTTGCGAGATGAACAGAAAGAACCGGCCGGATCTTTATTCAGATGTGTGGAGGGTATTGGACCCAATGAGGGCTTCCTCTGGAGGCACACTAAGTTCTTCAGGGCTTTACCAACCAATCCCATCATATTTCATTTGTCCAATCTTCCAGGAAGTAATGCGAGATCCCCATGTAGCCGCGGATGGCTTCACTTATGAAGCCGAGGCCATAAGAGGGTGGCTTGACAGTGGCCACGACGATTCGCCAATGACAAATTCGAAGCTTGCACACCGCGCACTTGTTCCAAACCGCGCTCTGAAGTCTGCAATTCAGGACTGGCTTCAAAGTCACTGA 2547 0.4649 MAVVSPVPATTQRMGSGRPVHEIGVSSGEIVEEPNQAVVVDQPIYIAVSKEVKESKVNLIWAIQNSGGRRICILHVHVPATKIPLPEMGAKFPPSSLKEEQVRAYRDKEKQTMDKTLEEYLGICQRMGTRAEKVHIEMENIEQGILELVSRHRIQRLVMGAASDRSYSRRMMDLRSKKAIFVRDQAPPFCHVQFICKGHLIHTRDRSSGEDNLVAPPLVQQVPNSAAERPVLPRSQSVVTLGQNQTSHCRELFRKVKSSNDGHVGSIMPDSSPDNSEGFSTPLNRIGTDISSDESDRLSRTRSPSALSVCSDSSAVDPTMTPNSISEITENVAELSLSHVIKEDLHHSSPPSVLQDGGMNDTIYDQLELAMAEAERATRNAYQETYRRGKAEKEAIEAMRKAKASESSYLEELNLRKRAEEELQKEKEQLESMKIQRDKVKEELQLALDQKSSLESQIASSELMIKEYEQKIISAVDLLQSYKKERDELQVQRDDALREATELRKKQGEASGMHTPPLFSEFSFFEVKQATNNFDQSRKIGEGGYGSIFKGMLRHSEVAIKMLHSDSMQGPLEFQQEVDVLSKLRHPNLITLVGACPESFTLIYEYLPNGSLEDRLVCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGICRILSRREGSADNTTEWRPALGITKEVSYALETGKLKSLLDPLAGDWPFVQAEQLSRLAMRCCEMNRKNRPDLYSDVWRVLDPMRASSGGTLSSSGLYQPIPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDDSPMTNSKLAHRALVPNRALKSAIQDWLQSH 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30355g00001 848 CDD STK_N 43 198 - -
Stsc30355g00001 848 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 55 169 - -
Stsc30355g00001 848 Pfam U-box domain 778 848 IPR003613 GO:0004842|GO:0016567
Stsc30355g00001 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Stsc30355g00001 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 777 848 IPR013083 -
Stsc30355g00001 848 Gene3D HUPs 34 172 IPR014729 -
Stsc30355g00001 848 MobiDBLite consensus disorder prediction 260 320 - -
Stsc30355g00001 848 SUPERFAMILY Protein kinase-like (PK-like) 513 750 IPR011009 -
Stsc30355g00001 848 Coils Coil 364 384 - -
Stsc30355g00001 848 Gene3D Transferase(Phosphotransferase) domain 1 607 707 - -
Stsc30355g00001 848 MobiDBLite consensus disorder prediction 264 289 - -
Stsc30355g00001 848 SMART serkin_6 534 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30355g00001 848 ProSiteProfiles U-box domain profile. 777 848 IPR003613 GO:0004842|GO:0016567
Stsc30355g00001 848 Coils Coil 409 506 - -
Stsc30355g00001 848 SMART Ubox_2 781 844 IPR003613 GO:0004842|GO:0016567
Stsc30355g00001 848 SUPERFAMILY RING/U-box 769 847 - -
Stsc30355g00001 848 Gene3D Phosphorylase Kinase; domain 1 519 606 - -
Stsc30355g00001 848 ProSiteProfiles Protein kinase domain profile. 534 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30355g00001 848 CDD RING-Ubox_WDSUB1-like 779 834 - -
Stsc30355g00001 848 ProSitePatterns Protein kinases ATP-binding region signature. 540 561 IPR017441 GO:0005524
Stsc30355g00001 848 Pfam Protein kinase domain 535 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30355g00001 848 MobiDBLite consensus disorder prediction 301 320 - -
Stsc30355g00001 848 PANTHER OS02G0152300 PROTEIN 44 693 - -
Stsc30355g00001 848 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 508 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30355g00001 Stsc-Chr30355 6321 11689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30355g00001 1 848 U-box Gene Family AT2G45910 48.991 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc30355g00001 Pkinase 3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30355g00001 - - gmx:100807515 1210.28