Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30354g00012 ATGTCCATCGCCGAAACTCCCACTGCCGAAACTGCTTCCCAGCAACGCGTAATCCACTCATCCAAGCGGAAGCTAGACGACTATGGTCCTCCCTTCGACGACGATGAATATGGCGCAGACGCAGAGGCGGATTTCGCCGGCGGCGACCCTGAAGTCGCCTACGCCGCCGGATTCCTTGCCAGGATCAAACGGGATGAGGCCAAACACGCCTCTAATTCGCCGTACGGTGCCACGGCAGCAGACGCTAGGTTTTGTGGCCGATCGTCCACTTCTTCCTCGCGAGGTGCTCAGTTTTGGAGCGGGTCGAGTGGGTCCGGGTCCGGGTCATGTTCGCGGGTACAGTTCTTTGTGAGAATGATGTCACGAGGGAATACGGTGGTGATGCAGGCATCACCTCACGACACAGTAAAATCGATCCACGAAAGAATCACGGTGATGACGGGTATACCAGTGTTCGAGCAGGGTTTAACATACAGAGGCAAACAGCTCCAGTGGGAGAACACTCTTCAAGAGTGTGGGATTCAGAACGATGCGAACCTTCACCTTGTTGGTCGCATGAGGAGTACCGAGCACCCTCAGGCGTGGCAGGTTCTGGAAAACATGGTTAGTCTTGTTTTCAAGCTCTGTAGAGGCGAAATTGTTCAAGAGGCTAACAAGGTGATCAAGAGCCTCATCACCAGTTACTTTAACATGACGCCCAAGGTTGATGATGCTACGACCACTTCTTATTTCCACATTTTTGTGGCCTCCAATGCCCCTTCCATGCTGGTAACTCTCTATGTTTCTCCCCATGATGGGAACAAGGAACGAGGTGATTTATATATAAGGCATTTCTTGAATTGTTGTCGCAATAACTTGTCTAAAACTTATCATGGTCAGTGTGCGAGTGTGGTGTTAGATTTGTGTAGTTTGCTTATGAGGGTTGGCTGTGATGATCTTCTGTACCTGCATTGCCGGAATACTTTGGGGTCTATGTTGGAGACTTCTGGTTGTTGCTATGTTTATGCTGCTAGTGGTAGGCATCGTAAAGGTGAAGGGTCTATTTTATTGCAGGATATCTGCCCCTTTGTTCGTGAGCTTGCGAATAGGTTGTTGAGGGATTTGGAGTTGAGCATCCAGCGCCCCAACAGTTCAGGGCCAGTGCATGGCGATGTTCGAGACTTTGAAGCTTTCTTGACCCCACTGAGGAAAGGAATTACCCAATTGCAAGCTATGAGGGGTTTGGGGATGGATGAGAAGTGCCATGAGAGAATCTTGCTTGCAGAAGAGGTGGATTACCTTCATCTTATATTTATTCAGATGTTGGAGAAAATGGAACAATGCCTTCGCCGCATGCAGGAATACTTGACTGACAAACTAAGACGAGATCAGGGGGATGTGGGTGTAACGTATACCGGATGTTCTCAATATCTTTCTATCTTGAAGGAATTGTATCAAATCTCGAAGCTATATGATGGCGCAGAGGAAAAATTTTGGAAGGTTTTGATCAATCAACGAAGTATGCTAGGTATACTTATCATCCAATATGCAAAGAGAGGTGATGATTACCAGTGGATTCTTGATCACAGATCTGTGACTAATTTTGAGGTGAGGAGGCATCTGGCAATGCTGTTGTTTCCTGATGTCAAAGAAGACTATGAGGAGTTACATGAGATGCTTATTGATAGGTCTCAATTATTGGCCGAATCCTACGAGTATATAGCACAAGCAAAGCCTTCATCTCTGCATGCTGGTCTATTTATGGAATTTAAAAATGAGGAAGCTACAGGACCGGGTGTGCTGAGGGAGTGGTTTCTTTTGGTGTGTCAAGCAATATTTAATCCAGAAAATGCTCTTTTTATAGCATGCCCAAACGATTGCAGGAGATTTTACCCTAATCCTGCATCTAAGATAGATCCTCTGCATCTAAAGTACTTCAGCTTTGCTGGTCGTGTTATTGCATTAGCTTTAATGTATAAGGTGCAAGTGGGTATTGTTTTTGATCAACTGTTTTTCAAGCAATTGGCTGGAAAGTCTGTTACTTTAGAAGATATACAGGAGGCAGATCCTTACTTGTATAGTAGCTGCAAGCAAATATTGGCGATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACCTTCGTGAGAGAGGTGGATGAATTAGGATGCAGGAAAGTGGTTGAACTTTGCTCTGGTGGGAAAAAACTTGTAGTGAATAGTAAGAACAGGGAGAAGTATGTTTCTCTTCTTATACGAAACTATTTTGTAACATCAATATCTGAGCAGGTATCACATTTTGCCAAGGGCTTTGGTGATATCCTTTCTAGTTCAAGGCACCATCAATTGTTCTTTAAAAGTTTAGAGCTCGAAGACCTTGATTGGATGCTCCATGGGAGTGAAAGTATGATTTCTGTTGAGGATTGGAAGGCTCATACCGAGTATAATGGCTATAAAGAGACTGATTGTCAAATATCTTGGTTTTGGGAGCTTCTTGGTAGAATGTCAGCAGAACAAAGGAAGATTCTTCTGTTCTTTTGGACATCCATCAAATATCTTCCAGTTGAAGGTTTCCGCGGTTTATCTTCCCGTCTATACATTTACAAGTCTCTGGAACCTGAAGACCACCTTCCTTCATCGCACACATGTTTTTACAGGCTGTGTTTCCCGTCATATTCGTCCAAGGCTGTCATGCAAGATCGCCTTGGAATCATCACTCAAGAACACGTTGGTAGCAGTTTTGGTACCTGGTGA 2736 0.4488 MSIAETPTAETASQQRVIHSSKRKLDDYGPPFDDDEYGADAEADFAGGDPEVAYAAGFLARIKRDEAKHASNSPYGATAADARFCGRSSTSSSRGAQFWSGSSGSGSGSCSRVQFFVRMMSRGNTVVMQASPHDTVKSIHERITVMTGIPVFEQGLTYRGKQLQWENTLQECGIQNDANLHLVGRMRSTEHPQAWQVLENMVSLVFKLCRGEIVQEANKVIKSLITSYFNMTPKVDDATTTSYFHIFVASNAPSMLVTLYVSPHDGNKERGDLYIRHFLNCCRNNLSKTYHGQCASVVLDLCSLLMRVGCDDLLYLHCRNTLGSMLETSGCCYVYAASGRHRKGEGSILLQDICPFVRELANRLLRDLELSIQRPNSSGPVHGDVRDFEAFLTPLRKGITQLQAMRGLGMDEKCHERILLAEEVDYLHLIFIQMLEKMEQCLRRMQEYLTDKLRRDQGDVGVTYTGCSQYLSILKELYQISKLYDGAEEKFWKVLINQRSMLGILIIQYAKRGDDYQWILDHRSVTNFEVRRHLAMLLFPDVKEDYEELHEMLIDRSQLLAESYEYIAQAKPSSLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPENALFIACPNDCRRFYPNPASKIDPLHLKYFSFAGRVIALALMYKVQVGIVFDQLFFKQLAGKSVTLEDIQEADPYLYSSCKQILAMDADFIDSDALGLTFVREVDELGCRKVVELCSGGKKLVVNSKNREKYVSLLIRNYFVTSISEQVSHFAKGFGDILSSSRHHQLFFKSLELEDLDWMLHGSESMISVEDWKAHTEYNGYKETDCQISWFWELLGRMSAEQRKILLFFWTSIKYLPVEGFRGLSSRLYIYKSLEPEDHLPSSHTCFYRLCFPSYSSKAVMQDRLGIITQEHVGSSFGTW 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30354g00012 911 CDD HECTc 550 909 IPR000569 GO:0004842
Stsc30354g00012 911 MobiDBLite consensus disorder prediction 17 31 - -
Stsc30354g00012 911 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 107 201 - -
Stsc30354g00012 911 Pfam HECT-domain (ubiquitin-transferase) 600 903 IPR000569 GO:0004842
Stsc30354g00012 911 Gene3D Hect, E3 ligase catalytic domains 553 785 - -
Stsc30354g00012 911 PRINTS Ubiquitin signature 124 144 IPR019956 -
Stsc30354g00012 911 PRINTS Ubiquitin signature 166 187 IPR019956 -
Stsc30354g00012 911 PRINTS Ubiquitin signature 145 165 IPR019956 -
Stsc30354g00012 911 SUPERFAMILY Hect, E3 ligase catalytic domain 546 896 IPR035983 GO:0004842
Stsc30354g00012 911 MobiDBLite consensus disorder prediction 1 44 - -
Stsc30354g00012 911 SMART hect_3 569 909 IPR000569 GO:0004842
Stsc30354g00012 911 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 114 909 - -
Stsc30354g00012 911 Gene3D - 109 202 - -
Stsc30354g00012 911 SMART ubq_7 113 185 IPR000626 GO:0005515
Stsc30354g00012 911 MobiDBLite consensus disorder prediction 1 16 - -
Stsc30354g00012 911 SUPERFAMILY Ubiquitin-like 113 201 IPR029071 -
Stsc30354g00012 911 ProSiteProfiles HECT domain profile. 571 911 IPR000569 GO:0004842
Stsc30354g00012 911 Gene3D Hect, E3 ligase catalytic domain 671 753 - -
Stsc30354g00012 911 ProSiteProfiles Ubiquitin domain profile. 113 189 IPR000626 GO:0005515
Stsc30354g00012 911 Gene3D Hect, E3 ligase catalytic domain 795 910 - -
Stsc30354g00012 911 FunFam E3 ubiquitin-protein ligase UPL5 795 910 - -
Stsc30354g00012 911 Pfam Ubiquitin family 116 187 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30354g00012 Stsc-Chr30354 40529 45370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30354g00012 113 187 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.000 3.71e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30354g00012 - - aip:107638691 1551.95