Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30353g00001 ATGTCTGAAAACTCCATAGGGCTACCAACAGAGATGTCTGAGCTTCATAGCTCAATAAATGTTCCTTCCAATGAACAACAAAAATCTTCACCAAAACTCTCCTTGTATCCCATCACTTTGAGGTTTGAGGAATTGGTGTATAAAATAAAAGCAGAGAAGAAAGAGAAAACCATATTGAAAGGAATCACAGGCATGGTTTTCCCAGGTGAAATCTTAGCCATGTTAGGTCCTTCAGGAAGTGGCAAAACCACACTCCTCACGGCACTCGGCGGCCGCCTCACCGGAAACAAACTCACCGGAAAGATCACATACAACAACCAACCTTTCTCAGGCACCATAAAAAGAAGAACAGGTTTTGTAGCACAGGATGATGTTCTATACCCTCACCTCACTGTTCTTGAAACACTTTTCTTCACTGCAATGTTAAGGCNNNNNNNNNNCCATGTGGAGCATGTTATCAATGAACTAGGATTGAGTAGGTGTAAAGATAGCATGATTGGAGGGCCACTTTTGAGAGGGATTTCAGGTGGGGAGAGAAAAAGGGTTAGCATTGGACAAGAAATGTTGATCAATCCAAGCCTTTTGCTTCTTGATGAACCAACATCTGGTTTGGATTCAACAACAGCATTGAAGATAGTGAACACTGTTAAGAAGTTAGCAAGTGATGGAAGAAGTGTGGTTATGACAATTCATCAACCATCTAGTAGGCTATATCATATGTTTGATAAGGTTGTGTTGCTCTCTGAAGGCTCTCCAATTTACTATGGCCTTGCTTCATCTGCAATGGAGTACTTTGAATCTATTGGTTTTTCCACTTCCATGACAGTTAATCCTGCTGATCTTTTGCTTGACCTTGCCAATGGGATTGCCCCAAACTGTAAGAATGCAATGGAGCAAAGTGAGAGCCATGAAGAAGAAAGGAAAGTGGTGAGGGAAGCTCTAATATCTGCTTATGAAAAGAACATAGCTACACAGCTTAAAGCTGAACTTTGTAGCAGCTTGGAGGTGAACAACTACAATAATAATGTCACAAAAGATGGTTTTGCAAAGAAGCAGAGAAGAAGAGATTGGGAATGGAGTACAAGCTGGTGGGATCAGTTGAAGGTGCTGCTGCAAAGGGGTCTGAGGGAGAGAAGGTATGAAGCCTTCAACAAGCTTAGAATATTCCAAGTTACAAGTGTTGCTTTTCTTGGTGGACTCTTGTGGTGGCAAACTCCACTATCTCACATTGGAGACAGAATAGCCCTGCTGTTTTTCTTCTCTGTTTTTTGGGGATTCTACCCACTCTACAATGCAGTATTCACATTCCCACAAGAGAGAAGAATGTTAATAAAGGAAAGATCATCAGGAATGTACAAACTCTCCTCCTACTTCATGGCAAGAACCATAGTTGACTTACCCTTAGAACTTGCACTCCCAACTTCATTTGTCATCATAATCTATTGGATGGGAGGCCTTAACCCTAACCCTATAACCTTCATCCTTTCCCTCCTTGTTGTCCTTTACAGTGTCCTTGTTTCCCAAAGTCTAGGATTGGCATTTGGTGCAATATTAATGGAGGTTAAACAAGCAACTACTTTGGCTTCAGTTACAACCCTAGTGTTCTTGATTGCTGGAGGATACTATATTCAACATATTCCTCCATTTATTGAGTGGTTGAAGTACTTGAGTTATAGCTACTATTGTTACAAGCTTCTTCTTGGTGTTCAATATAGTGAAGGTGATTATTATGAGTGCTCTAAAGGGGTGTTTTGTAGGGTTGGGGATTTTCCACCTATTAAATCAATTGGTGGGTTGAATCATTTGTGGGTTGATGTTTCTATTATGGCACTTATGTTGGTGGGTTATAGGCTAATTGCATATTTAGCACTTCATAGGGTGAGATAG 1887 0.4065 MSENSIGLPTEMSELHSSINVPSNEQQKSSPKLSLYPITLRFEELVYKIKAEKKEKTILKGITGMVFPGEILAMLGPSGSGKTTLLTALGGRLTGNKLTGKITYNNQPFSGTIKRRTGFVAQDDVLYPHLTVLETLFFTAMLRXXXXHVEHVINELGLSRCKDSMIGGPLLRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDSTTALKIVNTVKKLASDGRSVVMTIHQPSSRLYHMFDKVVLLSEGSPIYYGLASSAMEYFESIGFSTSMTVNPADLLLDLANGIAPNCKNAMEQSESHEEERKVVREALISAYEKNIATQLKAELCSSLEVNNYNNNVTKDGFAKKQRRRDWEWSTSWWDQLKVLLQRGLRERRYEAFNKLRIFQVTSVAFLGGLLWWQTPLSHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYKLSSYFMARTIVDLPLELALPTSFVIIIYWMGGLNPNPITFILSLLVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQHIPPFIEWLKYLSYSYYCYKLLLGVQYSEGDYYECSKGVFCRVGDFPPIKSIGGLNHLWVDVSIMALMLVGYRLIAYLALHRVR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30353g00001 628 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 621 - -
Stsc30353g00001 628 Pfam ABC-2 type transporter 366 571 IPR013525 GO:0016020|GO:0140359
Stsc30353g00001 628 FunFam ABC transporter G family member 22 46 268 - -
Stsc30353g00001 628 Gene3D - 38 330 IPR027417 -
Stsc30353g00001 628 SMART AAA_5 68 251 IPR003593 GO:0016887
Stsc30353g00001 628 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 274 IPR003439 GO:0005524
Stsc30353g00001 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 269 IPR027417 -
Stsc30353g00001 628 CDD ABCG_EPDR 37 256 - -
Stsc30353g00001 628 Pfam ABC transporter 59 202 IPR003439 GO:0005524
Stsc30353g00001 628 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Stsc30353g00001 628 Coils Coil 293 313 - -
Stsc30353g00001 628 Pfam ABC-2 type transporter 231 327 IPR043926 GO:0140359
Stsc30353g00001 628 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30353g00001 Stsc-Chr30353 1764 4675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30353g00001 58 251 Calmodulin-binding Proteins AT2G36910 28.502 1.61e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30353g00001 K05681 - gmx:100780191 935.636