Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30351g00011 ATGAACCAATACCATATCTACGAAGCTATTGGTCGCGGAAAATACTCCACCGTTTACAAAGGCAGGAAGAAGAAGACAATTGAGTATTTCGCCATCAAGAGTGTAGATAAGTCGCAGAAAAACAAGGTTCTTCACGAAGTAAAGATACTTCACTCTTTAGATCATCAAAACGTGCTCAAGTTTTATGAGTGGTATGAAACTTCTGCTCACTTATGGTTGATCTTGGAGTATTGCGTTGGAGGAGACTTAGTTTCTATAGTACGGGAGGATAACCGACTTCCTGAAGATTCAGTTCATGATTTTGCTTTCGATCTAGTCAAGGCTTTGCAGTATTTACATTCAAATGGAATACTTTATTGTGACCTTAAACCATCAAACATCCTACTAGACGAAAATGGGTGCGCAAAGTTATGTGATTTCGGATTAGCTAGAAAGGTGAAAGATATAAAAGTTGCTTCTGCGTTGCTTCAAGCCAAACGTGGAACACCCTCTTACATGGCTCCTGAACTTTTTGAGGATGGTGGAGTCCATTCCTATGCTTCGGATTTCTGGGCCCTGGGTTGTGTATTGTACGAATGTTATGCTGGGAGACCTCCTTTTGTGGGAAAAGAATTAACTCAGCTTGTGAAGTCCATCCATTTGGATCCAACTCCTCCTCTCCCTGGTAATCCAAGTCGTCCCTTTGTCAATTTAATTAATTCTCTGTTGGTAAAAGATCCAGCTGAGAGAATACAATGGCCTGAGCTTTGTGGTCACGCTTTTTGGAGAACCAAACACACTATGATGCCCTTGCCTGCTCAACCTGCATTTGATGATTTGATAGAGCAACAGGCTAAACCATGCGGTGATAAGTCCTCTCAAAACAGGACCCCTCCAAAATATCGTGAAAAAGATGCAAAGGGGGTGTTGAAGAAGGATGAGAGTTCAATTTTAGGGTCTAGAGGGATGGAGACACCAAATAGGGCAACACCTAATAGCCATAGAACACATACAAAGGGTTCTGGCAGAACAGTTGAGGCAAAGCAAAAGGATCCTTCCAATATTGGCAAAAGAGTGAATCTTTTGAGATTGTCAAAAATAGCGAAATCTAATCTACATAAAGAAAATGAGAAGGAAAATTACAGGCGCCCCTTACCTAATAGTGCTGAGAATGATTCTGAAGTCAAAATTGAGGACATTGACATGGAACTTGATTTTAATGAGAATACAGAAGATGATGCACCTGAGGAAGCCGATGGCTCTGAACATACAACTTCTGTCTGTGATGAGAATCCAGGGAAAGCAGAAGAGTTTGAGAGCAATATTAATCACCGGGATGAGTCAACTCCTGATCATCCTGACATATCTGCTATTTCTCCTAGTGTGAGCCCTCAGGTGAAGAAGCATAGAGTTAAAGATGACTCAGGATCTGATCTTGACACAGATTCTTCAAGGCCATCTAACAACTTCTCCCAAGTTCTTTGGCATGTATCTGATCTCTCAGTTAGACCAGTGATGCCGAGCAGAAAAGTTGATAAAGTCTCAGAAACCGTTCCTTCACTTCCTTTTGAAACTTTGAAAGCAGCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTCCAGAACCGAATTATAGCCATTCTGAATGGGAATACAAGCATTGGGGAGAAACAGAATGTGATTAGGTATCTTGGGATGTTAAGTAGTAATGCTGATGCAGCTAATATATTGACCAATGGCCCGATAATGCTCATGCTTGTGAAATTGCTTCGTCAATCCAAGGCATCAGCTCTGCGTGTTCAACTTGCTTCACTTATTGGTTTGTTGATTCGGCACTCTACTGTCGTTGATGACAGTTTGGCAAGTTCTGGAATTTTAGGCTCATTGACTGACAGCCTTAGAGACAAGCAGGAAAAAGTGAGGAGATTTTCCATGGCTGCTTTAGGTGAGTTGTTATTCTATATATCCACTCAAAATGCCGACTGCAGTAAAGACAACATTCCACTTGAATCTCCATCAAAGGACAGTAGGACTACATGTGGCTGGCAGGTTACAAATGCATTATTATCATTAGTGTCGTCAATGCTGAGGAAGGGCGAGGATGATATAACTCAATTGTATGCGTTGAGAACAATTGAGAATATTTTCAGTCAAGGAGGGCTGTGGGTGGGACGTTTGAGCAGTCAAGATGTCATTAGCAATCTTTGCTATATCTATAGGGCAGCAGGGAAACAAGAGAGCATGAGGCTTACCGCAGGATCATGCTTAGTGCGCTTAGTTCGGTTTAACCCTCCTAGCATTCAATCGGTTGTAGAGAAACTGTCATTCAAGGACCTTGCTTCAGCCCTTGTCAAGGGCAGTCCAAGAGAGCAGCAAGTCAGCCTAAATCTTCTTAACATGGCAATGCTTGGAAGTCACATGTTGACAAGTATTGGAAGATACCTTATAGCTCTTGTGGAGGACAAGAATTTGATCCCAAGTCTTGTGTCTCTTGTTGAGCAGGGTAGTGAAGTTCTAAAAGGAAAGGCACTTTTCTTTGTGGCTCTCCTTTGTAAGCATGGTAGGAGGTGGCTTCCACACTTCTTTTGTAGCCAAAAGCTACTTTCTATAGTGGACAGGCTAGGAAAAGAAAAGGATACATATGTGCGGCAGTGTTTAGATGCATTTGTTAACATTGTGGCATCAACTATTCCCGGTTTGCTAGATATAATAACTGGGGACATCCAACAAATGATGGGTGGAAGGCGCCATGGACATATTTCGGCTCTTTCCAGCAGATCTGCTCCAAAAACCAACATTCATTTGTTTCCGGTTGTCCTTCATCTTCTTAGCACTTCAACATTTAAACACAAAGTGGTGACAGTTCAAGTCCTACGGCAGCTGGCCAATCTAATTAAACTCATTGAGACACCGTTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGCATTTTAGAGTCTGTCACGGAGGAATCTCGTGTGATTTTTGGCAACCCAGATATTTTCATTCGTGAAATACTCCCGAGTTTGACAGTTCTATACAAGGGTAACAAGGACGGCGATGCTAGATTTTTGTGTCTTAAAATCTTTTTTGATGCGATGATTATTCTTTTAAGTGAACCAATTGAAGAAGAACAAAGATTGAAGGATCTGAAATTCATATCAAACGCCTGTTTTCTTCCTCTCTACCCAACTTTTATTGAAGATGAAGATCCTATTCCCATCTTTGCGCAGAGGCTTCTTGTCATGCTACTAGAGTTCAGCTTTATTACAATTCCGGACATTCTACACCTGAAGATAATTTCACAGTGCTTTGAGTTTTTGCTTGGTGATCTCTCAAATGCAAATGTGAATAATGTCAAGCTTTGTCTGGCTCTGGCTTCTGCACCTGAATTGGAGACCAAGTTACTCTCTCAATTGAAAGTGGTTAGGAGGATTGGCAACTTTCTTGAATTCGTATGTGCAAAGGAGATGGAAGATTTGTTGGAACCAACTCTCGGGCTAGACATAATGGACTTCGGAAGCAATGTTGGTGTCATGCTAGCCTTAAGTGCATCTGCTAAAACCAACATTGCTGACATAGCTTCCAAATGTGTGGTTTTACTTCTGAAGGCGGCTCCTCGAGAAGCCACCACTGGTCTACTGACGAATCTCCCCAAGGTGAGTGTGATCCTAGAGTCATGGAATAGAGGAATCCCTCACTTAATTGTGCAGCGAATGCTTCATGCTCTTGGTTATGGTTGCAAGCAGTACTTACTGCATGCAATGATATTGTCAATATCCATGCCAGAGATCTCAAGAATTGAAGCGATCATTTCTGAACTGAAGAGTTCAGGTGTTCCTGCTTTAGCCAAAACTGCTACACTGGCTGCCATGGAATTGCAGCGGCTGCCACGCTGCATTTGA 3894 0.4206 MNQYHIYEAIGRGKYSTVYKGRKKKTIEYFAIKSVDKSQKNKVLHEVKILHSLDHQNVLKFYEWYETSAHLWLILEYCVGGDLVSIVREDNRLPEDSVHDFAFDLVKALQYLHSNGILYCDLKPSNILLDENGCAKLCDFGLARKVKDIKVASALLQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGKELTQLVKSIHLDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKHTMMPLPAQPAFDDLIEQQAKPCGDKSSQNRTPPKYREKDAKGVLKKDESSILGSRGMETPNRATPNSHRTHTKGSGRTVEAKQKDPSNIGKRVNLLRLSKIAKSNLHKENEKENYRRPLPNSAENDSEVKIEDIDMELDFNENTEDDAPEEADGSEHTTSVCDENPGKAEEFESNINHRDESTPDHPDISAISPSVSPQVKKHRVKDDSGSDLDTDSSRPSNNFSQVLWHVSDLSVRPVMPSRKVDKVSETVPSLPFETLKAADFVKMPKEQLEAVQNRIIAILNGNTSIGEKQNVIRYLGMLSSNADAANILTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTVVDDSLASSGILGSLTDSLRDKQEKVRRFSMAALGELLFYISTQNADCSKDNIPLESPSKDSRTTCGWQVTNALLSLVSSMLRKGEDDITQLYALRTIENIFSQGGLWVGRLSSQDVISNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVVEKLSFKDLASALVKGSPREQQVSLNLLNMAMLGSHMLTSIGRYLIALVEDKNLIPSLVSLVEQGSEVLKGKALFFVALLCKHGRRWLPHFFCSQKLLSIVDRLGKEKDTYVRQCLDAFVNIVASTIPGLLDIITGDIQQMMGGRRHGHISALSSRSAPKTNIHLFPVVLHLLSTSTFKHKVVTVQVLRQLANLIKLIETPFQGRDDFQITLLRILESVTEESRVIFGNPDIFIREILPSLTVLYKGNKDGDARFLCLKIFFDAMIILLSEPIEEEQRLKDLKFISNACFLPLYPTFIEDEDPIPIFAQRLLVMLLEFSFITIPDILHLKIISQCFEFLLGDLSNANVNNVKLCLALASAPELETKLLSQLKVVRRIGNFLEFVCAKEMEDLLEPTLGLDIMDFGSNVGVMLALSASAKTNIADIASKCVVLLLKAAPREATTGLLTNLPKVSVILESWNRGIPHLIVQRMLHALGYGCKQYLLHAMILSISMPEISRIEAIISELKSSGVPALAKTATLAAMELQRLPRCI 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30351g00011 1297 SUPERFAMILY ARM repeat 539 889 IPR016024 -
Stsc30351g00011 1297 Gene3D Transferase(Phosphotransferase) domain 1 1 310 - -
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 459 473 - -
Stsc30351g00011 1297 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 289 311 - -
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 412 445 - -
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 313 331 - -
Stsc30351g00011 1297 ProSiteProfiles Protein kinase domain profile. 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 332 346 - -
Stsc30351g00011 1297 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1164 IPR044591 GO:0000911|GO:0000914|GO:0008017
Stsc30351g00011 1297 CDD STKc_ULK4 3 255 - -
Stsc30351g00011 1297 Gene3D - 524 891 IPR011989 -
Stsc30351g00011 1297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 279 483 - -
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 361 378 - -
Stsc30351g00011 1297 SUPERFAMILY Protein kinase-like (PK-like) 1 256 IPR011009 -
Stsc30351g00011 1297 FunFam Aurora kinase A 1 81 - -
Stsc30351g00011 1297 SMART serkin_6 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30351g00011 1297 MobiDBLite consensus disorder prediction 397 411 - -
Stsc30351g00011 1297 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30351g00011 1297 FunFam Maternal embryonic leucine zipper kinase 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30351g00011 Stsc-Chr30351 69433 76041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30351g00011 3 266 MAP Kinase Kinase Kinase AT3G06030 31.295 1.52e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Stsc30351g00011 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30351g00011 K17545 - gmx:100777288 2180.22