Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30351g00009 ATGGAACAGTTGAAATCAGTTAAGAAACATAGGCATGGCAGAAGGGTCAAACAACTAGAAAGGTATGAGCATAAAATGAGGGAAGAGCGTCAAAAACGAATCCGTGAAAGACAGAAGGAATTTTTCAGTGAGATTGAAGTCCACAAGGAAAAGCTTGATGATGTATTCAAAATTAAGAGGGAACGCTGGAAGGGTGTCAATAGATACGTGAAAGAGTTCCATAAAAGAAAAGAGCGTATTCATCGTGAGAAGATTGATAGGATCCAGCGGGAGAAGATTAATTTGTTGAAGATAAATGATGTGGAGGGCTATCTACGGATGGTTCAGGATGCGAAATCTGATCGTGTGAAGCAACTACTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGATCCAAGCTACAAGAAGCAAAGACTGCAGCAGGTCGCTTTGAACAGGATATTGATGAGGCACGATGTGGCAGTTTTCTTGAGAAGAGTGAATCTACTCTTGAAAACGAGGATGAAGGTGATCAGGCAAAGCATTATCTGGAAAGCAATGAGAAATATTATATGATGGCACACAGTGTAAAGGAGAGCATTGCAGAGCAGCCGTCTTGTTTGAAGGGTGGAAAATTGAGGGAGTATCAAATGAATGGCCTTAGGTGGCTTGTTTCCTTATATAACAACCACTTGAATGGAATCCTTGCTGATGAAATGGGACTGGGTAAAACTGTTCAGGTTATTTCTCTAATTTGCTACCTGATGGAAAGTAAAAATGATAGGGGGCCATTTCTTGTGGTTGTACCCTCTTCAGTTCTACCTGGTTGGGATTCAGAAATCAACTTTTGGGCTCCCGATATTCATAAAATTGTCTATGCTGGACCACCAGAGGAGCGACGACGGTTATTCAAGTAA 897 0.4103 MEQLKSVKKHRHGRRVKQLERYEHKMREERQKRIRERQKEFFSEIEVHKEKLDDVFKIKRERWKGVNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKTAAGRFEQDIDEARCGSFLEKSESTLENEDEGDQAKHYLESNEKYYMMAHSVKESIAEQPSCLKGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMESKNDRGPFLVVVPSSVLPGWDSEINFWAPDIHKIVYAGPPEERRRLFK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30351g00009 298 PANTHER SNF2/RAD54 HELICASE FAMILY 1 298 - -
Stsc30351g00009 298 ProSiteProfiles HSA domain profile. 26 98 IPR014012 -
Stsc30351g00009 298 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30351g00009 298 Coils Coil 19 39 - -
Stsc30351g00009 298 Coils Coil 120 147 - -
Stsc30351g00009 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 297 IPR027417 -
Stsc30351g00009 298 Gene3D - 173 298 IPR038718 -
Stsc30351g00009 298 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 298 IPR014001 -
Stsc30351g00009 298 Pfam SNF2-related domain 209 292 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30351g00009 Stsc-Chr30351 60186 62540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30351g00009 188 288 RAD5 or RAD16-like Gene Family AT1G05120 39.091 1.74e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc30351g00009 SNF2_N 2.2e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30351g00009 - - ahf:112795784 576.63