Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30351g00004 ATGCAAGCAGCTCAAGCATCACCAACTGATGAAGTCTCTGTCTCTGAGATTCCACCCCAGATTAACCACCATACGAACAAAGAAGTTTCGGATAATAGACCAAGTGGGAAACGTCCTGATATTTCACTTCAAGTTCCACCTAGACCCGTAGGGTTCGGAAGCACTTGTGGTGGAAGGGCTTTGGACCATTCTCAAAGCTTCTCCAAAAGCCTCTCATCATCAAGAGGTTTTTTGCGGGCATTGAGCTTCAAAAGAAAAGCTAATGTAACAGATGGCGAAAGAAGCTGCCTCCTTAATTCAGATCCTAAGACATCTGCAGACAGTTCTAATATGGACTCCATATCTGAAGCTGCGTGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAACTCTGTCTCCTTCGGTTTCAACACCTGTTTCTGCAAGGACTTATACTGAACAGACTAAGCAGCTTAAAGATGATGGTCGTTCCAAGGTTTCAAGGTCCCTCTCTGTACCCGGGAGAAATGTTGTTATTGTAAGATCCATATCTTTTTCCACCCGTAGTGAACAGGATCAGCAAGATACAAACGATGATCAGATAACTCCTGTGCCACCAGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCGGTCTGCAGGATATGTCTGGATGTCTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTCAGACTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGTGGGCACGAGGTTCAGAATTTACCCGTAACATTGCTTCGTGTTTCCAGCTCTGTTCAACGGCAAAGTAGACAAGTGCAGGGTCAAATGAACCTAAGTTCAGAGTCAATAAATGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTTCTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACGTTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAACTGTGCATCTATTTTATACTATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCATCAACTATTTATATATCCAANNNNNNNNNNTCAGGTTTCTCACAGTGATAACCTCCCTGTTTGAATTTCCTAAGAAGTGA 1287 0.4211 MQAAQASPTDEVSVSEIPPQINHHTNKEVSDNRPSGKRPDISLQVPPRPVGFGSTCGGRALDHSQSFSKSLSSSRGFLRALSFKRKANVTDGERSCLLNSDPKTSADSSNMDSISEAAWKRCTSLPVTPASTLSPSVSTPVSARTYTEQTKQLKDDGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDTNDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSVQRQSRQVQGQMNLSSESINAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSINYLYIQXXXXRFLTVITSLFEFPKK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30351g00004 428 PANTHER OS02G0165000 PROTEIN 43 414 - -
Stsc30351g00004 428 MobiDBLite consensus disorder prediction 182 207 - -
Stsc30351g00004 428 MobiDBLite consensus disorder prediction 182 196 - -
Stsc30351g00004 428 SUPERFAMILY RING/U-box 212 266 - -
Stsc30351g00004 428 SMART ringv_2 215 263 IPR011016 GO:0008270
Stsc30351g00004 428 Pfam RING-variant domain 216 262 IPR011016 GO:0008270
Stsc30351g00004 428 MobiDBLite consensus disorder prediction 1 59 - -
Stsc30351g00004 428 MobiDBLite consensus disorder prediction 129 148 - -
Stsc30351g00004 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 271 IPR013083 -
Stsc30351g00004 428 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30351g00004 428 ProSiteProfiles Zinc finger RING-CH-type profile. 208 269 IPR011016 GO:0008270
Stsc30351g00004 428 CDD RING_CH-C4HC3_MARCH 216 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30351g00004 Stsc-Chr30351 22211 26118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30351g00004 229 324 C3H Transcription Factor Family AT5G59000 31.250 5.74e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30351g00004 - - gmx:100777100 603.594