Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30351g00001 ATGGAGCCCCTCCCTTCTCTCCCTTCTCCTCCTCCTCCCCACAACAACAACATGGACGACGACCCTTCCTCAATTTGGGACCTCACTTACCTTCTCGACTTCAACCTCGACGACGACCAAATCCCGTTACCCCTTGACTCTGACCAACCATCTCAACCGTTGGATTTAGCTCCTCCCGATCCACAACATATTCCTCCTGCTTCTCCTCTTCCCGCCAACGACAAGGTTCGGAAACGCGACCCGAGGCTCACATGCTCCAACTTTCTCGCGGGTCGGGTTCCATGTGCGTGCCCCGAGCTCGATGCGCAGATCGAGAACGAGGGTCTCCCCGGCAGGAAGCGCGTGCGCACCGTTTCTTCCGCGCGTGGCTCCACCGTTTGTTGTCAGGTTCCCGGCTGCGAGGTCGATATCACGGAGCTGAAGGGGTACCACCGGAGGCATAGGGTTTGCCTCCGCTGTGCTAATGCTGCCACCGTTATGCTCGACGGCGAGGCCAAGAGATACTGTCAACAGTGTGGCAAGTTTCACGTGTTGTCGGATTTTGATGAAGGTAAACGTAGCTGTAGGAGAAAGTTAGAGCGCCATAACAACAGGAGGCGAAGAAAGCCAGCAGATTCAAGTGCTGCAGCTGCTCATGAACCTCTGCCTATTGCACAGAATGAGGATTCAAATAATGATGGGGAATCAGGAAAAGGTTTAGATTCTTCAAATTTGAGTAATGAAATAAATGAAAAAGAAGCGTCACTGGATCTTGAAGATGAACCAGTTGCTAATCTGAACTCTGCTCCTGATATTCAGAATATTACAAGTGACAGTGTTATGACTTTTCTTGCTTCTGGGGAAACACAAATGAATAGTGGAAAAGATATTTCCAATCTCTCTAACTCTCCTTCATATTGTGACAATAAGAGTGCTTATTCTTCTTTGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAACCCTGCAGAATTTCCTAGAAGGCTACGCCACCAAATATTCCAATGGTTGGCAAGTATGCCTGTAGAGCTTGAGGGATATATCCGCCCAGGGTGTACTATCTTGACAATTTTTATAGCCATGCCAAAGATTATGTGGATAAATTTACATGAAGACCCGATGTACTATGTCCGTGATCTTGTTGCTCCTGGAAAGATTCTATCTGCAAGAGGCAATGCACTAATTCATCTGAATGATATGGTCTTCCGCATTATGAAAGATGGAACCTCAGTGACAAAAGTCAAGGTAAACATGAAGGCACCAAGACTTCACTATGTTCATCCGACATACTTTGAGGCTGGGAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTGATGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGGAAGTATCTGAAGTGTGAATATTGTGTTCCATCTCCACATCACTGGTCTGGAAACAATATTTCTTGTGCTTTTGAGAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCGTTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATTCCCATCCTCATTGGGGACAAAGAAGTTTGCAGTGAGATGACGGCATTGCAGCAAAGATTAGACGAGTCTCTTCATTCTAAACGATTCCAGTCTACATCTGATGGTTCTATCTGCAGCTCGTGTGAAGATTTTGCACATAGGCACTCATCATCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGAACCCAACCTCAGAAAATTTTGAGAGAATGGTGACAGCTTCACAAATTCAAAGATACTGTTACTTGTTGGACTTTCTAACACGCAATGATTCATTACTCATTTTGGAAAAAATATTACCGAAGTTGGTGATCTTGATAGAAAGCTTGAAATCAAATATTGTGATTAGTAGGACAAGTGATGTTAACTTGACACCACTACTGAATTGCATGCATCTTGCTAGAGATGTTATTTATCAGAATCATCAGAAAGGCAGAGGCATAGTTGTCCATTCTGAAACAGAAGGCTTTAGGATTGCTAAAACCTGCACCCTAGACAGCTTGCCATCAGTTTCAGGGATAAAAAGTCAGGATGTTCTTTCCAGAACGGATTCAAAGTTGGGAATAATGAGAAGCCCAACATCTAATGACAAAACTGATAGGATTCCACTTTTGAAGAGGGAGATTATAATGAACATGGAAGAGTTTCCTAAACAATCCTGCCGGCGATATGTCGGTAGGGGATACTTGAGCTCACGACCGGCAATATTTGTGATTGTTTCGGTTGCTATTTGTCTTGGGGTATGTGTAGCCGTCCTTCACCGGGGGAGGGTTAGTGAGTTGGCTGTATCCATTAGAAGGTGTTTGTTTAACTCTTGA 2379 0.443 MEPLPSLPSPPPPHNNNMDDDPSSIWDLTYLLDFNLDDDQIPLPLDSDQPSQPLDLAPPDPQHIPPASPLPANDKVRKRDPRLTCSNFLAGRVPCACPELDAQIENEGLPGRKRVRTVSSARGSTVCCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSSAAAAHEPLPIAQNEDSNNDGESGKGLDSSNLSNEINEKEASLDLEDEPVANLNSAPDIQNITSDSVMTFLASGETQMNSGKDISNLSNSPSYCDNKSAYSSLCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPKIMWINLHEDPMYYVRDLVAPGKILSARGNALIHLNDMVFRIMKDGTSVTKVKVNMKAPRLHYVHPTYFEAGKPMEFVACGSNLMQPKFRLLVSFSGKYLKCEYCVPSPHHWSGNNISCAFENQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPILIGDKEVCSEMTALQQRLDESLHSKRFQSTSDGSICSSCEDFAHRHSSSDLLVDIAWLLKNPTSENFERMVTASQIQRYCYLLDFLTRNDSLLILEKILPKLVILIESLKSNIVISRTSDVNLTPLLNCMHLARDVIYQNHQKGRGIVVHSETEGFRIAKTCTLDSLPSVSGIKSQDVLSRTDSKLGIMRSPTSNDKTDRIPLLKREIIMNMEEFPKQSCRRYVGRGYLSSRPAIFVIVSVAICLGVCVAVLHRGRVSELAVSIRRCLFNS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30351g00001 792 MobiDBLite consensus disorder prediction 38 77 - -
Stsc30351g00001 792 SUPERFAMILY SBT domain 126 205 IPR036893 GO:0003677|GO:0005634
Stsc30351g00001 792 MobiDBLite consensus disorder prediction 218 239 - -
Stsc30351g00001 792 Pfam SBP domain 128 202 IPR004333 GO:0003677
Stsc30351g00001 792 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30351g00001 792 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 83 607 IPR044817 GO:0003677
Stsc30351g00001 792 MobiDBLite consensus disorder prediction 192 239 - -
Stsc30351g00001 792 Gene3D - 123 189 IPR036893 GO:0003677|GO:0005634
Stsc30351g00001 792 MobiDBLite consensus disorder prediction 54 68 - -
Stsc30351g00001 792 ProSiteProfiles Zinc finger SBP-type profile. 125 202 IPR004333 GO:0003677
Stsc30351g00001 792 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30351g00001 Stsc-Chr30351 278 5923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30351g00001 18 786 SBP-box Gene Family AT5G18830 47.919 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc30351g00001 SBP 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30351g00001 - - aprc:113863838 1132.86