Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30350g00013 ATGGGGATGAAGAAGAGCGAAAAAGGCAGCAAGCAAGTGATGGAAAATAAGAAGAATGAGAAGAAAGATGTTGGCAATGCAACCATAGGAAATGACGGCATTTTTGCTTCCTGCTCCTTCTCCAGCCTTGGCCTCCACCCCTCCTTATGCGATGAACTACGTGAAAAATTGGGATTCGAAGTTCCAACTTTGGTGCAAGCTCAAGCCATTCCCGTTATTCTTGCTGGTCGTCATGCACTTATTAATGCCGCCACGGGCACAGGGAAGACAGTTGCATACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTCGCATACAACGTTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTTCATTGGATTGTTCCAGGGTATGTTATGGGTGGGGAAAATAGATCAAAGGAAAAAGCCAGGCTACGCAAAGGCATATCAATACTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGCGCTGGATAATTTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGAAAAGATATACAGGAAATACTAGATCTTTTAGGTTCAACAAAAGCAGCAAATGATAACGAGGAGAACACAGTTCCAAGAAACTCTAAATTTCAAAGACAGAATTTGCTTTTGTCTGCCACCTTAAATGACAAAGTAAACCATCTTGCTAAAATAAGTCTACAGAATCCCGTAATGATTGGTCTTGAGGGTAAAACAAGAGAACCAGTATCAACAATTGAAAGCGTTGATCCTTCAGAATCTGATGAAGATGATGAAGTCAAATATTCCAGTAAAATACCAACAGTTGGAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAGTGCCTTGTGGTTCTCGTCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCGCAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCGGTAGACTTTCACTATTCACTGCTTAGTGAGTTCCACTTCTCAACTGATGCTCAAACAAAAGAAGGGGTCCGGAAGATGTTTCTTGGATGCAGAACTTTTCGGTTGCATGGTAATATGGAACATGAAGACCGGAGATCCACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCGAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGCTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAACAGAGTATCCTCTTCCCAAAGTGTTGGATAATTTTCCACTCTATGGACAAAATAAACTAGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGATCCTTTGTCTCCAGAAAGCACTTGAATCCTTCATCATTTCCAAGCCGAAGATGGATGAACTTGCGAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACTGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCCAAAAGCTTTGCGTTGAAGCAACAACCCTCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGGAAGAGATTTGAGAAGAAAAGTGGTCTATCCAAAAAGAGAAAAGTTGCTAGAGTGAAGGAGTAA 1830 0.4049 MGMKKSEKGSKQVMENKKNEKKDVGNATIGNDGIFASCSFSSLGLHPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADRILELGFGKDIQEILDLLGSTKAANDNEENTVPRNSKFQRQNLLLSATLNDKVNHLAKISLQNPVMIGLEGKTREPVSTIESVDPSESDEDDEVKYSSKIPTVGDYKIPTQLIQRYVKVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHYSLLSEFHFSTDAQTKEGVRKMFLGCRTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLEKHGVSLTEYPLPKVLDNFPLYGQNKLVKKSVFIDLHPWILCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKSGLSKKRKVARVKE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30350g00013 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 499 IPR001650 -
Stsc30350g00013 609 CDD DEADc_DDX31 49 267 - -
Stsc30350g00013 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 266 IPR014001 -
Stsc30350g00013 609 SMART helicmild6 369 452 IPR001650 -
Stsc30350g00013 609 Pfam Helicase conserved C-terminal domain 329 452 IPR001650 -
Stsc30350g00013 609 Pfam DEAD/DEAH box helicase 64 254 IPR011545 GO:0003676|GO:0005524
Stsc30350g00013 609 MobiDBLite consensus disorder prediction 580 609 - -
Stsc30350g00013 609 FunFam RNA helicase 2 268 - -
Stsc30350g00013 609 CDD SF2_C_DEAD 311 461 - -
Stsc30350g00013 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 194 202 IPR000629 -
Stsc30350g00013 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 43 315 IPR014013 GO:0005524
Stsc30350g00013 609 PANTHER RNA HELICASE 18 580 - -
Stsc30350g00013 609 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30350g00013 609 Gene3D - 321 605 IPR027417 -
Stsc30350g00013 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 38 67 IPR014014 GO:0003724
Stsc30350g00013 609 Gene3D - 2 269 IPR027417 -
Stsc30350g00013 609 MobiDBLite consensus disorder prediction 584 609 - -
Stsc30350g00013 609 SMART DUF4217_3 514 579 IPR025313 -
Stsc30350g00013 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 473 IPR027417 -
Stsc30350g00013 609 SMART ultradead3 58 279 IPR014001 -
Stsc30350g00013 609 Pfam Domain of unknown function (DUF4217) 516 576 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30350g00013 Stsc-Chr30350 74965 82573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30350g00013 31 484 Eukaryotic Initiation Factors Gene Family AT3G19760 25.431 1.13e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30350g00013 K14806 - gmx:100805157 964.911