Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30350g00010 ATGTGGTCTGACAATTCTCAATGGAATCAGTCCATTTTTCCCTTGACTGATGTTCCAAGCAACTGTATTCAACCATCTTGTAGTGTGAATCGAACCAACGGTTTATGTGCAGTAGTGACTAACAACTCAAAATCTCTCTTGAGTGAGAGATGTGATAATCCTCATTCTTCTGTATGTGTACTTGATATAGATAGGAAATGTAACCATATGCACTGCCACAGGGAATACCTTATCATCCTTTTAGTTGTGAGTGCATTGATACTCTCGACAACATTAGCGGTGGTGGTTTGGCTCCTTGTATATAAACAGGGCAAGAAAAGAAGGCGGTCTAGAAAACTATCTGACCCAGCAGCTTCTGTTCCATCATGGAAAGTTTTTACCAAAGATGAATTAAGGTCTATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATGCCAAGGCGGGCGGTACATACAGCGGAGTCCTTCCAGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAGCTTCCAACGTAAAAAGGAGTTCTATTCAGAGATTGGTAGGGTTGCAAGGCTCCACGATCCAAATCTAGTAGCTGTAATGGGGTGCTGCTATGATCACGGGGACCGATATATTGTTTATGAGTTTGTAGCTAATGGACCCTTAGATAAATGGCTACATCACATACCAAGAGGAGGGCGGAGCTTAGACTGGGCTATGAGGATGAAAATTGCCACCACACTTGCTCAAGGGATTGCGTTTTTGCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGAGCTAGTAATGTACTGTTAGACGAGGAGTTCGGAGCACACCTGATGGGTGTTGGTCTATCAAAGTTTGTACCATATGAAGCAATGCACGATCGGACCGTCATGGCAGGTGGAACATATGGATATCTTGCTCCAGAGTTTGTGTATAAAAACGAGCTAACAACAAAAAGTGATGTGTATAGTTTTGGTGTCCTCCTACTCGAAATAGTCACTGGGCGCCGACCTGCACAAGCAGTTGATTCTATGGGTTGGCAGAGTATATTTGAATGGGCAACGCCCCTTGTGCAAGCGAATCGCTACCCTGAACTCTTGGATCCTCATATTTCATCATCGTCTTCAAGTATCATCCCAGAGACAAATACCATTCAGAAGGTGATCGACCTTGTCTATTCTTGCACACAGCATGTTCCGTCTATGCGCCCTAGAATGTCTCATGTTGTTCTTCAGTTACAACAGTTCTCCCAACCTCCCGCAAAGTAA 1278 0.4366 MWSDNSQWNQSIFPLTDVPSNCIQPSCSVNRTNGLCAVVTNNSKSLLSERCDNPHSSVCVLDIDRKCNHMHCHREYLIILLVVSALILSTTLAVVVWLLVYKQGKKRRRSRKLSDPAASVPSWKVFTKDELRSITKNFSEGNRLVGDAKAGGTYSGVLPDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLHDPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHDRTVMAGGTYGYLAPEFVYKNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSMGWQSIFEWATPLVQANRYPELLDPHISSSSSSIIPETNTIQKVIDLVYSCTQHVPSMRPRMSHVVLQLQQFSQPPAK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30350g00010 425 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 215 425 - -
Stsc30350g00010 425 SMART tyrkin_6 144 416 IPR020635 GO:0004713|GO:0006468
Stsc30350g00010 425 FunFam C-type lectin receptor-like tyrosine-protein kinase 116 214 - -
Stsc30350g00010 425 SUPERFAMILY Protein kinase-like (PK-like) 111 416 IPR011009 -
Stsc30350g00010 425 ProSiteProfiles Protein kinase domain profile. 139 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30350g00010 425 Gene3D Phosphorylase Kinase; domain 1 114 214 - -
Stsc30350g00010 425 Gene3D Transferase(Phosphotransferase) domain 1 215 421 - -
Stsc30350g00010 425 ProSitePatterns Tyrosine protein kinases specific active-site signature. 261 273 IPR008266 GO:0004672|GO:0006468
Stsc30350g00010 425 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 418 - -
Stsc30350g00010 425 Pfam Protein tyrosine and serine/threonine kinase 159 416 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30350g00010 Stsc-Chr30350 65508 70151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30350g00010 2 422 Receptor kinase-like Gene Family AT1G52310 70.327 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Stsc30350g00010 PK_Tyr_Ser-Thr 8.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30350g00010 - - gmx:100794353 732.25