Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30350g00009 ATGGAAGTGAAACCCATAGCTCTGCAATTACTAGTCCTTACTTCAGTTATTCTGGTTCTCCTTCTTCTTGGACTGCCTTCCATTGCAGCACTTAATGAGACTTGCGGTTCGCTCAATCGAGACACTCAAGCACCATGCCCGACTGATTGGGTTATAGATCGTAACAAGACCAAGTGTTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGAGTCGGAGACTTGTTGTAATAAGTATGGTGGGCATTTAGCGTCATTGGCATCGGTTCAGGAACTACAATTTGCTCAGAATCTATGCGGCGAATCTATCAACAGTTGCTGGATTGGTGGAAGAAGTATCAATTCTACAACTGGTTACCAATGGATGTGGTCTGACAATTCTCAATGGAATCAGTCCATTTTTCCCTTGACTGATGTTCCAAGCAACTGTATTCAACCATCTTGTAGTGTGAATCGAACCAACGGTTTATGTGCAGTAGTGACTAACAACTCAAAATCTCTCTTGAGTGAGAGATGTGATAATCCTCATTCTTCTGTATGTGTACTTGATATAGATAGGAAATGTAACCATATGCACTGCCACAGGGAATACCTTATCATCCTTTTAGTTGTGAGTGCATTGATACTCTCGACAACATTAGCGGTGGTGGTTTGGCTCCTTGTATATAAACAGGGCAAGAAAAGAAGGCGGTCTAGAAAACTATCTGACCCAGCAGCTTCTGTTCCATCATGGAAAGTTTTTACCAAAGATGAATTAAGGTCTATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATGCCAAGGCGGGCGGTACATACAGCGGAGTCCTTCCAGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAGCTTCCAACGTAAAAAGGAGTTCTATTCAGAGATTGGTAGGGTTGCAAGGCTCCACGATCCAAATCTAGTAGCTGTAATGGGGTGCTGCTATGATCACGGGGACCGATATATTGTTTATGAGTTTGTAGCTAATGGACCCTTAGATAAATGGCTACATCACATACCAAGAGGAGGGCGGAGCTTAGACTGGGCTATGAGGATGAAAATTGCCACCACACTTGCTCAAGGGATTGCGTTTTTGCATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGAGCTAGTAATGTACTGTTAGACGAGGAGTTCGGAGCACACCTGATGGGTGTTGGTCTATCAAAGTTTGTACCATATGAAGCAATGCACGATCGGACCGTCATGGCAGGTGGAACATATGGATATCTTGCTCCAGAGTTTGTGTATAAAAACGAGCTAACAACAAAAAGTGATGTGTATAGTTTTGGTGTCCTCCTACTCGAAATAGTCACTGGGCGCCGACCTGCACAAGCAGTTGATTCTATGGGTTGGCAGAGTATATTTGAATGGGCAACGCCCCTTGTGCAAGCGAATCGCTACCCTGAACTCTTGGATCCTCATATTTCATCATCGTCTTCAAGTATCATCCCAGAGACAAATACCATTCAGAAGGTGATCGACCTTGTCTATTCTTGCACACAGCATGTTCCGTCTATGCGCCCTAGAATGTCTCATGTTGTTCTTCAGTTACAACAGTTCTCCCAACCTCCCGCAAAGTAA 1641 0.4381 MEVKPIALQLLVLTSVILVLLLLGLPSIAALNETCGSLNRDTQAPCPTDWVIDRNKTKCFLHVGRPQSWNESETCCNKYGGHLASLASVQELQFAQNLCGESINSCWIGGRSINSTTGYQWMWSDNSQWNQSIFPLTDVPSNCIQPSCSVNRTNGLCAVVTNNSKSLLSERCDNPHSSVCVLDIDRKCNHMHCHREYLIILLVVSALILSTTLAVVVWLLVYKQGKKRRRSRKLSDPAASVPSWKVFTKDELRSITKNFSEGNRLVGDAKAGGTYSGVLPDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLHDPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHDRTVMAGGTYGYLAPEFVYKNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSMGWQSIFEWATPLVQANRYPELLDPHISSSSSSIIPETNTIQKVIDLVYSCTQHVPSMRPRMSHVVLQLQQFSQPPAK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30350g00009 546 CDD CLECT 58 180 - -
Stsc30350g00009 546 ProSiteProfiles C-type lectin domain profile. 55 181 IPR001304 -
Stsc30350g00009 546 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 539 - -
Stsc30350g00009 546 Gene3D - 27 183 IPR016186 -
Stsc30350g00009 546 ProSitePatterns Tyrosine protein kinases specific active-site signature. 382 394 IPR008266 GO:0004672|GO:0006468
Stsc30350g00009 546 Gene3D Transferase(Phosphotransferase) domain 1 336 542 - -
Stsc30350g00009 546 SMART CLECT_2 46 181 IPR001304 -
Stsc30350g00009 546 Gene3D Phosphorylase Kinase; domain 1 235 335 - -
Stsc30350g00009 546 FunFam C-type lectin receptor-like tyrosine-protein kinase 237 335 - -
Stsc30350g00009 546 Pfam Lectin C-type domain 66 181 IPR001304 -
Stsc30350g00009 546 ProSiteProfiles Protein kinase domain profile. 260 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30350g00009 546 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 336 546 - -
Stsc30350g00009 546 Pfam Protein tyrosine and serine/threonine kinase 280 537 IPR001245 GO:0004672|GO:0006468
Stsc30350g00009 546 SMART tyrkin_6 265 537 IPR020635 GO:0004713|GO:0006468
Stsc30350g00009 546 SUPERFAMILY Protein kinase-like (PK-like) 233 537 IPR011009 -
Stsc30350g00009 546 SUPERFAMILY C-type lectin-like 14 183 IPR016187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30350g00009 Stsc-Chr30350 65508 70151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30350g00009 76 543 Receptor kinase-like Gene Family AT1G52310 69.748 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Stsc30350g00009 PK_Tyr_Ser-Thr 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30350g00009 - - vra:106762676 897.886