Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30350g00001 ATGCAGACACATCTACTCACGCGCACTATTCTCACTTTCCTTCTGCTGTTCACATCTCCAACATTCTTTATCTTCTCCATCGCATCACCACCGTCAAAAAACAACCGCAGCAACAACGCGCAAGATCTGGTCCGTTCATCATGCGTTCACACAAGGTACCCGAGTATCTGCCTCAGAACACTCTCAAACTACGCTGGGCCTGCCAACTCCCCGTTGGACGTGGCCCGGGCCGCCCTCAGGGTAAGCCTGGCCCATGCCCGACGAGCCAGCAGGTACCTAAAGTCTCTCCAATCACCAGTGGCAGGCCCAGGCCCAGGCCCGTCGGGCCCAAAGTCGATGATGCAGAGAGCGGCGCTGAGTGATTGCATTGAGCAGATGGCAGACTCGGTGGAGGAGCTGAAGAGGAGCCTTGAGGAGCTGCAGCACCTCAAAACGGCAACGTTTCAGTGGCAAATGAGTAACGCACAGACTTGGGTGAGTGCTGCCCTCACAGATGGAGACACGTGTCTCGATGGATTTGGAGACGGAAGCAACGGCGGCAGAAGAGGCGGTGGAGGCAAGATGAGGAGGAGCGTGAAGCGGAGGGTGACGGACGTGGCCAGGGTCACCAGCAATGCACTTTACATGATCAACCAAGCTGGTGAAACAAGGCCCGGGAAGGCCTAA 666 0.5676 MQTHLLTRTILTFLLLFTSPTFFIFSIASPPSKNNRSNNAQDLVRSSCVHTRYPSICLRTLSNYAGPANSPLDVARAALRVSLAHARRASRYLKSLQSPVAGPGPGPSGPKSMMQRAALSDCIEQMADSVEELKRSLEELQHLKTATFQWQMSNAQTWVSAALTDGDTCLDGFGDGSNGGRRGGGGKMRRSVKRRVTDVARVTSNALYMINQAGETRPGKA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30350g00001 221 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 213 IPR035513 -
Stsc30350g00001 221 MobiDBLite consensus disorder prediction 174 194 - -
Stsc30350g00001 221 CDD PMEI-like_3 46 211 - -
Stsc30350g00001 221 NCBIfam pectinesterase inhibitor domain 18 212 IPR006501 GO:0004857
Stsc30350g00001 221 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 212 IPR035513 -
Stsc30350g00001 221 FunFam Pectinesterase inhibitor 3 39 214 - -
Stsc30350g00001 221 Coils Coil 123 146 - -
Stsc30350g00001 221 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 208 - -
Stsc30350g00001 221 Pfam Plant invertase/pectin methylesterase inhibitor 42 208 IPR006501 GO:0004857
Stsc30350g00001 221 SMART PMEI_2 39 209 IPR006501 GO:0004857
Stsc30350g00001 221 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30350g00001 Stsc-Chr30350 9113 9986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30350g00001 27 216 Carbohydrate Esterase AT3G14310 27.041 1.71e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30350g00001 - - aip:107634498 293.508