Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30349g00019 ATGAACACATGGCCACCTAGCTTTATATACTCTTCCTCTTCCTCACAACAAAATACCACTGTTATTCCGTCTTCTAATTCTCATTCATCAATGGGGATGGTTTATGCAGACATGGCTTCTCTTTCTCTTTCTACCAACTACACTCTCGCCCCCTCCGCGGTTTCTTCTTCTCACGACTCCACCACCATAGCCTGGGGCTTTCCCTTTGAGGAGCACCCCATCAACAACAGTGATCTTCTCGAGGGTACTACAAAAGGTTCTGATAGCAGCGAAGATATTGGGGTTATTGAAGAAAACAAGAATAATAATAATAATAACCCTAATAATAAAGAAGGAGAGAGTAGCAGTGGACAGTCAAAGCTGTGTGCAAGAGGTCACTGGAGACCAGCAGAAGATTCAAAACTGAAGGAGCTTGTTGCCCTTTATGGCCCTCAGAACTGGAACCTCATTGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGCTGTAGACTGAGATGGTTCAACCAGCTTGACCCAAGAATAACAAGGAGGGCGTTCACTGAAGAAGAGGAAGAGAGGCTGATGCAGGCACACAGGATTTATGGTAACAAATGGGCCATGATTGCCAGGTTGTTCCCTGGCAGAACCGATAACGCTGTTAAGAATCATTGGCATGTTATTATGGCTAGAAAGTATAGGGAACAATCCACTGCTTACAGGAGGAGAAGGCTCACTACTCAATCAAACAATGCCATTTACACAAGAATTCACCATGTATCATCATCATCAGAACCACCACCACATTATTTTGTGTCTTCCTTCTCCTCATCATCACTACCCTTTCATGGTGGCCTTCTTGACTTTGCTGCTTCTACCAATAATAAGCCTTATGCTGCTGCTTCCTCTTCTTCTTCTTCTACCTTGTTTCCTCACCACACACCCTTTAATTTCTTCTCTGGAGGGAGAAGCAATAATAATAGTAGTAACGGTGACAAGGTAGCAGAGTATTATTATGGAAGTAATCATAATCATAATCATAATCATTATCATTATAATGAGCAGCAAGCACAACATAATCATGGTTACTACCCTCGTTATGCTAATCATCAGTGTATGATGATGATGCCGGTGCAACAGCAACAGCAACATCAAAACCATAACAAGAGTTTTTACAGCTTCTCATCAAATTCAAGCAACAAAGTAGCACAGGTGCTAGGCAGTGATCCTTCACTATCATCCATGGCAGAACAACAACACAGAGATGATGAAGAAGCCAGTGACCCCCCAACAACAATCCCAGAACCTCCGTTATTTATTGATTTCCTTGGAGTAGGAGCCACCACATGA 1326 0.4276 MNTWPPSFIYSSSSSQQNTTVIPSSNSHSSMGMVYADMASLSLSTNYTLAPSAVSSSHDSTTIAWGFPFEEHPINNSDLLEGTTKGSDSSEDIGVIEENKNNNNNNPNNKEGESSSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRITRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRRRLTTQSNNAIYTRIHHVSSSSEPPPHYFVSSFSSSSLPFHGGLLDFAASTNNKPYAAASSSSSSTLFPHHTPFNFFSGGRSNNNSSNGDKVAEYYYGSNHNHNHNHYHYNEQQAQHNHGYYPRYANHQCMMMMPVQQQQQHQNHNKSFYSFSSNSSNKVAQVLGSDPSLSSMAEQQHRDDEEASDPPTTIPEPPLFIDFLGVGATT 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30349g00019 441 PANTHER MYB PROTEIN-RELATED 124 350 - -
Stsc30349g00019 441 SUPERFAMILY Homeodomain-like 124 217 IPR009057 -
Stsc30349g00019 441 ProSiteProfiles Myb-like domain profile. 124 170 IPR001005 -
Stsc30349g00019 441 CDD SANT 127 168 IPR001005 -
Stsc30349g00019 441 MobiDBLite consensus disorder prediction 1 27 - -
Stsc30349g00019 441 ProSiteProfiles Myb-like domain profile. 171 221 IPR001005 -
Stsc30349g00019 441 FunFam MYB transcription factor 124 175 - -
Stsc30349g00019 441 CDD SANT 178 218 IPR001005 -
Stsc30349g00019 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 170 IPR017930 -
Stsc30349g00019 441 FunFam MYB transcription factor 177 248 - -
Stsc30349g00019 441 Gene3D - 177 247 - -
Stsc30349g00019 441 MobiDBLite consensus disorder prediction 97 125 - -
Stsc30349g00019 441 Pfam Myb-like DNA-binding domain 124 170 IPR001005 -
Stsc30349g00019 441 Pfam Myb-like DNA-binding domain 176 219 IPR001005 -
Stsc30349g00019 441 SMART sant 123 172 IPR001005 -
Stsc30349g00019 441 SMART sant 175 223 IPR001005 -
Stsc30349g00019 441 Gene3D - 124 175 - -
Stsc30349g00019 441 MobiDBLite consensus disorder prediction 402 431 - -
Stsc30349g00019 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 225 IPR017930 -
Stsc30349g00019 441 MobiDBLite consensus disorder prediction 97 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30349g00019 Stsc-Chr30349 87586 89603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30349g00019 123 236 MYB Transcription Factor Family AT1G69560 90.351 1.91e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30349g00019 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30349g00019 K09422 - gmx:100804537 335.88