Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30349g00017 ATGGACTTAGTTCTCTCAACTGATGCAAAGCCAAGGCTGAAATGGACTCCTGAACTTCACCAAAGATTCATTGAGGCAATTAATCAGCTTGGAGGTCCAGAAAAAGCAACACCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGGCTCACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGCAAAAGCCAACTACAACTAGAAATCTTTTCTGACAACAACAAACATGAAGATTGCAGAGAAATGAAGAACATTGATGATCCTTGTAGAAGCAGAGAAGCAAGTATTGGGACACAGAATGAGATGACTGAAAGCATGCAAATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAAGAAACTTTATGAGCAAATTGAGGTGCAGAGACACTTGCAGCTTAAGATTGAAGCACAAGGGAAGTACTTGCAATCAGTACTACACAAGGCACAAGAAACACTTGTAGAATACAGTTCTTCTCCGGCCTCGGCCGCGAAAGCTGAGCTTTCACAGTTAGTATCAATAATCAACAATGCCTGCCCCGGATCTCCTCCGATTTCGGAACTGACAGAAACAAGAGGGTTCAGTTGGAGCCATGGGCAGAGGAAGGAGAACAGAGGAACCATATGTTCACCTGAAATTGAAAGTTCTTTGACATCTTCTGAAAGCTCAATGGATCAAAGGCCTAATAGTACCAACACTACTAACACTGCTTCAGTTGAATTGTTGCCACTATTCAAAGAATCCAAGGAAGATAAAGATGAAGCTATTATAGGGAGAAAGAGGAGTTCAAGCTGCTGTGTTGATCAGCCATCAAAGATGATCAAATCTGAATTAGTGCCTGATATCATTGACTTGAATTCAGAACAAATAGATTTGAATTGCGGTTCAAGCTTTTGGGAACAATGA 921 0.4137 MDLVLSTDAKPRLKWTPELHQRFIEAINQLGGPEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQLQLEIFSDNNKHEDCREMKNIDDPCRSREASIGTQNEMTESMQIAEALQMQMEVQKKLYEQIEVQRHLQLKIEAQGKYLQSVLHKAQETLVEYSSSPASAAKAELSQLVSIINNACPGSPPISELTETRGFSWSHGQRKENRGTICSPEIESSLTSSESSMDQRPNSTNTTNTASVELLPLFKESKEDKDEAIIGRKRSSSCCVDQPSKMIKSELVPDIIDLNSEQIDLNCGSSFWEQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30349g00017 306 Coils Coil 113 133 - -
Stsc30349g00017 306 SUPERFAMILY Homeodomain-like 9 65 IPR009057 -
Stsc30349g00017 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 250 IPR044848 GO:0003700
Stsc30349g00017 306 Gene3D - 9 68 - -
Stsc30349g00017 306 MobiDBLite consensus disorder prediction 199 244 - -
Stsc30349g00017 306 Pfam Myb-like DNA-binding domain 12 63 IPR001005 -
Stsc30349g00017 306 FunFam Myb family transcription factor 9 67 - -
Stsc30349g00017 306 Pfam MYB-CC type transfactor, LHEQLE motif 110 157 IPR025756 -
Stsc30349g00017 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 10 65 IPR006447 GO:0003677
Stsc30349g00017 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 67 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30349g00017 Stsc-Chr30349 68491 70258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30349g00017 1 275 G2-like Transcription Factor Family AT1G69580 52.901 3.99e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc30349g00017 Myb_DNA-binding 9.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30349g00017 - - gmx:100805252 333.183