Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30349g00010 | ATGAGCGATCATCTGGTGCTGTACGTTGACCGGCTGGTGCGTCCCGTTGTGCCGGTCGAGCCGCTAGCCCAGCACCCGGCTCAGCCATCTCCCGAACCCCAACCTTCGCTAGATACTCCTCCGGACGCCACGGCGGGGCCCTCTGCCTCTTCTCCTGAGTCCGACGACGAGGAGGATGAGGGAGCGCCTCTGTTGCAGATGGCGGAATGCCGCATTTGTCAGGAGGAGGACACCGTCAACAATCTCGAGTCACCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCTTATGAACCTGGTTATACTGCCCCACCACCTCGTGCACATCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATTTCTGGCACACCTTTGGACTTGCGTGATCCTCGTCTCTTGGCAATTGCTGAGGCAGAACGCCAATTCTTGGAAGCAGAGTACGATGGATATGCTGCTTCTAATGCCAGTGGTGCTGCATTTTGCCGTTCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTTCAGTCACCGATGAAGATTCTGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCGACTCAAGTGGCCTTTGTTTTTCAATCCGGGCAGAGGAGGGGTCTGCAATTTGCCATTGCACCAGGACCAGCAGTGAGTAGTACACACCAGGAACAAACAAGTGTAGTTTGA | 879 | 0.5222 | MSDHLVLYVDRLVRPVVPVEPLAQHPAQPSPEPQPSLDTPPDATAGPSASSPESDDEEDEGAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDEDSDDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSSTHQEQTSVV | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30349g00010 | 292 | MobiDBLite | consensus disorder prediction | 22 | 40 | - | - | |
| Stsc30349g00010 | 292 | FunFam | RING/FYVE/PHD zinc finger protein | 58 | 126 | - | - | |
| Stsc30349g00010 | 292 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 125 | IPR013083 | - | |
| Stsc30349g00010 | 292 | Coils | Coil | 158 | 178 | - | - | |
| Stsc30349g00010 | 292 | CDD | RING_CH-C4HC3_MARCH | 70 | 116 | - | - | |
| Stsc30349g00010 | 292 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 62 | 122 | IPR011016 | GO:0008270 | |
| Stsc30349g00010 | 292 | MobiDBLite | consensus disorder prediction | 20 | 61 | - | - | |
| Stsc30349g00010 | 292 | Pfam | RING-variant domain | 70 | 115 | IPR011016 | GO:0008270 | |
| Stsc30349g00010 | 292 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 249 | IPR033275 | - | |
| Stsc30349g00010 | 292 | SMART | ringv_2 | 69 | 116 | IPR011016 | GO:0008270 | |
| Stsc30349g00010 | 292 | Pfam | Protein of unknown function (DUF3675) | 121 | 239 | IPR022143 | - | |
| Stsc30349g00010 | 292 | SUPERFAMILY | RING/U-box | 68 | 120 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30349g00010 | Stsc-Chr30349 | 45922 | 48320 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30349g00010 | 47 | 119 | C3H Transcription Factor Family | AT2G22120 | 36.842 | 1.82e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30349g00010 | - | - | ahf:112734090 | 492.656 |