Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30349g00009 ATGGACTTGACCTCCAACAATACCCACACCTTAGATTCAGATACTAAAACCCCACCACCAACCCAACCCACCAACACCAACACCCTAAAGTCACTATCTTTAACAAACGCCACACACAACCACCACTCCACCACCACGCCTCCGCCGCCCTCCATGGCGGTCATTTCCTACAAAGAATGTCTCAAGAACCACGCCGCCACCATAGGTGGCCATGCACTTGACGGTTGCGGAGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCACCTTTTTAAACTGCTTCTACTCCCCTTCCACAGGCACCACCCCTGCAGCACCACCTCCACCGCCTCAACCACTCCCTCATCGCGGCATGAGCCAAAGTACAAGCCCAAGCCTTAGCTCAAGCCCAAGCCACAGCCCTAGCCCGATGTCAAGCCCTTCTTCACCTCCACCACTTTCACACGTGCCACCACCACCACCACCATCTGCAGCAGGTTCTTACCACTCTTCGGCACCGCACATGCTCTTAGCTTTAGGGAACGCGTATTCTACTGCAGTTGCATCAGATCAGGAGCACCATCACCTTCACAGAAACTCCTTCAACAACTTCTCCCCCGTTGTTCTCAACACAAACAGTGGCGGCAATAATAATAATAATAGTAGTAAGAACAAAAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTATAAATTCTCTGAGAAATTGGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTCCAGGACTTCTGTAATGACATCGGTGTCCCTCGTGGCGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGAGATCCTCTTCTTCCGAACCTCCTCCTATTGATGCTGCTGGAAACAACAATAACCTCAATGAATCTCTTCTACTTCCTCGTCATCAGAATAATCATGATCAAAAAATCAATGGTGGCGGTGGCGATGATACTAATCATAATAATAAGAATGGAGATATGAATGGAAGTAGTAATAATAGTGTCAACAATGTTGTTGCTCATGTTCCCATCAATGGGCTCTCATCTTAA 1143 0.4891 MDLTSNNTHTLDSDTKTPPPTQPTNTNTLKSLSLTNATHNHHSTTTPPPPSMAVISYKECLKNHAATIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSTFLNCFYSPSTGTTPAAPPPPPQPLPHRGMSQSTSPSLSSSPSHSPSPMSSPSSPPPLSHVPPPPPPSAAGSYHSSAPHMLLALGNAYSTAVASDQEHHHLHRNSFNNFSPVVLNTNSGGNNNNNSSKNKRYRTKFSQEQKEKMYKFSEKLGWRMNNKGDDSLVQDFCNDIGVPRGVFKVWMHNNKNTFNKKRSSSSEPPPIDAAGNNNNLNESLLLPRHQNNHDQKINGGGGDDTNHNNKNGDMNGSSNNSVNNVVAHVPINGLSS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 126 140 - -
Stsc30349g00009 380 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 301 - -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 301 380 - -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 161 184 - -
Stsc30349g00009 380 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 1 29 - -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 141 160 - -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 225 244 - -
Stsc30349g00009 380 Pfam ZF-HD protein dimerisation region 55 108 IPR006456 -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 225 252 - -
Stsc30349g00009 380 FunFam Zinc-finger homeodomain protein 2 229 304 - -
Stsc30349g00009 380 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Stsc30349g00009 380 Gene3D - 228 305 - -
Stsc30349g00009 380 NCBIfam homeobox domain, ZF-HD class 243 300 IPR006455 -
Stsc30349g00009 380 MobiDBLite consensus disorder prediction 125 187 - -
Stsc30349g00009 380 SUPERFAMILY Homeodomain-like 230 304 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30349g00009 Stsc-Chr30349 35124 36266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30349g00009 55 302 ZF-HD Transcription Factor Family AT1G69600 43.600 1.86e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc30349g00009 ZF-HD_dimer 7.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30349g00009 - - adu:107481218 450.669