Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30349g00006 ATGCTTTCTTCTTTGTTTCCCTCTTTGTCCATGGCTAAACATTATTATTACAACAATAATGTTCCACCAGAAACATTTTGTGACTCCACAGAAGACCCTCCTTATTGCAAAACCCTCCTTGCAAACCAATACGGCAACGCTTACGACTACGGTCGAATATGCGTCGAAAAATCAGTGTCACAATCACTCACCTTCTTGAATTTAATGGACTCATATCTCCACGATGATTATGAGTACGATCAAAACACCATTCGAGCCCTCCAAGATTGCAGATTCCTTGCTCAACTTAACTATGATTTCTTGTACACCACACAAGAGACGGTTAATAAATCCAGCACTGTCCTTCAATCTTCTCATGCTGAAGACATTGTGACACAGCTGAGTGCCACTCTGACGAATCAACAAACATGTCTGGAAGGTCTTGAAAGCACAGCTTCCGATGAAAGTGTGAAGAGTTTTGTTTCCTCTATGCTCTCTAATGATACCAGGCTCCATAGCATGTCCTTGTGTTTGTTCAAGAGGGGTTGGGCTCCTGACAAGAAAATCAAACATTCATGGAAACACAATGGTCGTTCACAGTATAAGATGCCAAAACGATTACGTGACATGTATGATTCGAGTAGAGGCAACCACGGCCACCACGGCAACCACCACTGGAGGAAACTGCTTCAGACGGATACCGTAAATGTAAGAGACATGTTGGTTGTTAGCAAGGACGGAAGCGGAAACTTCACCACCATCAACGAAGCAATTGCTGCTTCCCCAAATAACTCGGCTGCCAGTGATGGCTACTTCATTGTTTTCATCAAGGAAGGTGTGTATGAAGAGTACGTCTCCATTGCCAAGAACAAGAAGCACTTGATGCTTGTTGGAGATGGAATTAACCACACAATCATCACCGGAGATCACAATGTTGTCGATGGCTTTACAACCTTCAATTCAGCAACCTTTTCTGTGGTAGGAGAAGGTTTTGTAGCAGTAAACATAACATTCAGGAACACAGCAGGGCCAAGCAAGCACCAAGCAGTAGCCCTTAGAAGTGGAGCCGACTTGTCAGCCTTCTACATGTGCAGCTTTGAAGGCTACCAAGACACACTCTACACCCATTCCATGCGTCAATTCTACAGCGACTGCGACATTTATGGCACCGTTGATTTTATTTTCGGAAACGCCGCCGTAGTGTTCCAAAACTGCAACATCTTCCCCCGCCTCCCTATGACAGGCCAGTTCAACACAATTACCGCACAAGGAAGAACCAATCCGAACCAGAACACTGGAATGTCCATACACAACGCAACGGTGAGACCTGCTGACGATTTAGCACCTCTTGTTGGTGCTGTGAAGACGTACCTTGGTAGGCCCTGGAAGCAATACTCCAGGACGGTTTTCATGGAATCTTTTTTGGATGGTTTTGTTGATCCTGCTGGATGGCATGATTGGAGTGGAAGTTTTGCTCTGAATACCTTGTATTACGCTGAGCATAACAATTCCGGAAGAGGTTCAAGCACTTTAGGCCGAGTTTTGTGGCCTGGCTATCATGTTATTGGCCCAACGGATGCTGCTAATTTCACGGTGTCTAATTTCTTGCGGGGGGAAATATGGTTGCCTCAAACCGGTGTCCCTTTCTTGAATGGCTTAATATAA 1644 0.4501 MLSSLFPSLSMAKHYYYNNNVPPETFCDSTEDPPYCKTLLANQYGNAYDYGRICVEKSVSQSLTFLNLMDSYLHDDYEYDQNTIRALQDCRFLAQLNYDFLYTTQETVNKSSTVLQSSHAEDIVTQLSATLTNQQTCLEGLESTASDESVKSFVSSMLSNDTRLHSMSLCLFKRGWAPDKKIKHSWKHNGRSQYKMPKRLRDMYDSSRGNHGHHGNHHWRKLLQTDTVNVRDMLVVSKDGSGNFTTINEAIAASPNNSAASDGYFIVFIKEGVYEEYVSIAKNKKHLMLVGDGINHTIITGDHNVVDGFTTFNSATFSVVGEGFVAVNITFRNTAGPSKHQAVALRSGADLSAFYMCSFEGYQDTLYTHSMRQFYSDCDIYGTVDFIFGNAAVVFQNCNIFPRLPMTGQFNTITAQGRTNPNQNTGMSIHNATVRPADDLAPLVGAVKTYLGRPWKQYSRTVFMESFLDGFVDPAGWHDWSGSFALNTLYYAEHNNSGRGSSTLGRVLWPGYHVIGPTDAANFTVSNFLRGEIWLPQTGVPFLNGLI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30349g00006 547 PANTHER PECTINESTERASE 24 536 - -
Stsc30349g00006 547 SUPERFAMILY Pectin lyase-like 232 544 IPR011050 -
Stsc30349g00006 547 Pfam Plant invertase/pectin methylesterase inhibitor 24 169 IPR006501 GO:0004857
Stsc30349g00006 547 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Stsc30349g00006 547 CDD PMEI-like_3 25 177 - -
Stsc30349g00006 547 SMART PMEI_2 18 171 IPR006501 GO:0004857
Stsc30349g00006 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 174 IPR035513 -
Stsc30349g00006 547 FunFam Pectinesterase 227 546 - -
Stsc30349g00006 547 Gene3D - 227 546 IPR012334 -
Stsc30349g00006 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Stsc30349g00006 547 Pfam Pectinesterase 234 531 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30349g00006 Stsc-Chr30349 19783 21654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30349g00006 25 547 Carbohydrate Esterase AT4G02330 55.354 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30349g00006 K01051 - gmx:100813051 724.546