Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30349g00005 ATGGAGGAGAGAAACGATAGCGCAGCTGAGAAACTTGATGAGATCATGTTACCAGGTTTCAGGTTCCATCCAACTGATGAGGAGCTTGTTGGTTTCTATCTTAAGAGAAAGATTCAGCAAATGCCTCTCTCCATTGAGCTCATCAAGCAACTTGATATCTATAAGTATGATCCCTGGGATCTTCCAAAGGTGGCAGGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGGCCAAATAGAGTAACTGGAGCTGGCTTCTGGAAAGCTACAGGGACTGACAGGCCTATATACTCCTCAGAGGGTTCAAAGTGCATTGGCCTCAAGAAGTCTTTGGTCTTCTACAAAGGCAGAGCTGCCAAAGGTGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTCCCTTCTCTTTTAGACTCTTCTTCTTCTCCTCCAAAGAAGTACTTGGACAAGACCACCATTCCTCCTAATGACTCTTGGGCAATCTGCAGAATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCACTCTCTCACTCTTGGGTTTCTTCTTCTACCTTACCTGAAAAAACAACAACCACTCATGATCACATGATAACCAATGATAGAGATCACACATTCCAGTTTTGTTCATCCAACATGATGCCAACATTAATGGCAGCAAAGAAAACTAGCAGCTTCATGAGCCAGTTTTGCACTAACTACAGCACTGACACACAAATCCATCAAGATGCTGCATCATCTTATAAACCCTTTATTAATATTAATCCATTGCTTTACAAACACTTTGATCATCATCATCAATTACCACCCATTATTTCAAATGGAGATCTTATCAGCAATAACGGTGGTTTAATACCCTCTTGTACTAATAATACTCCACTTGAAAATAGTACTGAAAAACCTACTATGGATTTTTCTTCATTGTTGCTGAACATGTCATCTTCTGTTCTTGGAGATTTCGGTGGAAAGACATCATCATCATCATCTTCGTCACAAGAGGGTACAGCAACAACAATGACAAGTAGTAGCTTCGCTGGTGGTGGAATGCAAGAGCACTACTCAACAATACCATTACTGCGCGAGATGCATCAAGGAAACAATAACAACAACAATGTGTGTAGTGGTGGTGAAGAGCAAGAGTTGGAGAAAGTAGGATCCATTGTTGGGTTTCCATTCATGAATATGGGGGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCTCTTGTCCCTTGTGA 1269 0.4121 MEERNDSAAEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQMPLSIELIKQLDIYKYDPWDLPKVAGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLLDSSSSPPKKYLDKTTIPPNDSWAICRIFKKTNATAQRALSHSWVSSSTLPEKTTTTHDHMITNDRDHTFQFCSSNMMPTLMAAKKTSSFMSQFCTNYSTDTQIHQDAASSYKPFININPLLYKHFDHHHQLPPIISNGDLISNNGGLIPSCTNNTPLENSTEKPTMDFSSLLLNMSSSVLGDFGGKTSSSSSSSQEGTATTMTSSSFAGGGMQEHYSTIPLLREMHQGNNNNNNVCSGGEEQELEKVGSIVGFPFMNMGDAWKSNMLWDTSSCPL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30349g00005 422 FunFam NAC domain-containing protein 35 25 180 - -
Stsc30349g00005 422 SUPERFAMILY NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
Stsc30349g00005 422 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 255 - -
Stsc30349g00005 422 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Stsc30349g00005 422 MobiDBLite consensus disorder prediction 331 358 - -
Stsc30349g00005 422 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Stsc30349g00005 422 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30349g00005 Stsc-Chr30349 17280 18817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30349g00005 1 224 NAC Transcription Factor Family AT1G26870 71.875 3.53e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30349g00005 NAM 7.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30349g00005 - - gmx:100810284 457.988