Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30348g00013 ATGGAGAACCACCAAATGTCATCATATGATTTTAAGGTATCTAACAATAGTTTTCTTGAAGTTAAGAAAGGGGATATTCTAAGAACTCCAAATAAAGAATCATCAAGCAAGAAAAGTGGGAAGAAAGAGATAAAGAAGCAGCACAGATATGTGTTTCAAACAAGGAGTCATGTTGATATACTTGATGATGGATACCGCTGGAGAAAATATGGGGAAAAGGCTGTGAAAAACAATAAATTCCCCAGGAGTTACTATAGATGCTCATATAGAGGGTGCAATGTGAAGAAACAAATCCAACGGCAATCCATGGACGAGCAGGTGGTGGTAACAACCTATGAAGGGGTCCATATTCACCCTGTCGAGAAGTCTACTGAAAGCTTCGACCAGATCTTGAGGAACTTTCAATCCACAACCATGTCCATGTCCATGTCCATGTCCAACCCTATTATGTATCTCCAACAACCTAATTAG 471 0.3949 MENHQMSSYDFKVSNNSFLEVKKGDILRTPNKESSSKKSGKKEIKKQHRYVFQTRSHVDILDDGYRWRKYGEKAVKNNKFPRSYYRCSYRGCNVKKQIQRQSMDEQVVVTTYEGVHIHPVEKSTESFDQILRNFQSTTMSMSMSMSNPIMYLQQPN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30348g00013 156 MobiDBLite consensus disorder prediction 24 47 - -
Stsc30348g00013 156 SUPERFAMILY WRKY DNA-binding domain 53 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30348g00013 156 Gene3D WRKY domain 48 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30348g00013 156 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 137 IPR044810 GO:0003700
Stsc30348g00013 156 SMART WRKY_cls 61 120 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30348g00013 156 FunFam WRKY transcription factor 57 46 121 - -
Stsc30348g00013 156 MobiDBLite consensus disorder prediction 25 47 - -
Stsc30348g00013 156 Pfam WRKY DNA -binding domain 62 118 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30348g00013 156 ProSiteProfiles WRKY domain profile. 56 121 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30348g00013 Stsc-Chr30348 70731 71585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30348g00013 49 135 WRKY Transcription Factor Family AT5G13080 78.161 7.79e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30348g00013 WRKY 3.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30348g00013 - - gmx:100127378 189.119