Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30347g00011 ATGATGAGCATCAATGATCTTTTTCAAACCCATGAAGCTCCAATTCCTAATATGGTACCAAACTATGTTTCAAGCCACCTCAATAATATTCAAATTCAAACCCGTCAAACTCAAGCTTCTTTCTCTAAGCCTCCAACATCCTCAAACTTGAGCAACCGGAAGCCCTTTTTGAAGAACATATCAATCCCTTCAACAAGAGCACCTCTCACAACCTTCACACAACAAAATGAAACAACGACAACCGTTAACTGCAGCAATAATCAAAGTTTCTCTGAAAGTTGTGATCTCAAAGACGACAAGCATTACAGAGGCGTTAGGAGACGGCCTTGGGGGAAATTCGCAGCCGAGATTCGCGACCCGAATCGGAAAGGATCGAGGGTGTGGCTGGGAACATTTGACACAGCCATAGAAGCTGCTAGAGCATACGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATACTGAACTTCCCTCTTGAAGTTGGAGAATACTCTGAAGAATGTTCAGTTTCTTGCTCAACAATGAAGGCTGGTGAGAAGAGGAGAAGAGAGAATGATGAAGAAGGTAGTGAAAATGTTGTGGAGAAGAGTAACAATAATAAGAAGCAGGTGAAGAAAGAAGACTGCTTCACCGCATGTCCTTTAACACCATCTTGTTGGAAAGGGTTTTGGGACACTGAAGTTCCTGGAACAATCTTTAGTGTTCCTCCTTTGTCACCTTTATCTCCGCTCATGGTTGTTTGA 747 0.427 MMSINDLFQTHEAPIPNMVPNYVSSHLNNIQIQTRQTQASFSKPPTSSNLSNRKPFLKNISIPSTRAPLTTFTQQNETTTTVNCSNNQSFSESCDLKDDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAARAYDRAAFKMRGSKAILNFPLEVGEYSEECSVSCSTMKAGEKRRRENDEEGSENVVEKSNNNKKQVKKEDCFTACPLTPSCWKGFWDTEVPGTIFSVPPLSPLSPLMVV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30347g00011 248 CDD AP2 100 159 IPR001471 GO:0003700|GO:0006355
Stsc30347g00011 248 ProSiteProfiles AP2/ERF domain profile. 101 159 IPR001471 GO:0003700|GO:0006355
Stsc30347g00011 248 MobiDBLite consensus disorder prediction 180 200 - -
Stsc30347g00011 248 FunFam Ethylene-responsive transcription factor 2 100 161 - -
Stsc30347g00011 248 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Stsc30347g00011 248 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Stsc30347g00011 248 PANTHER DNA-BINDING DOMAIN 51 204 IPR044808 GO:0003700|GO:0009873
Stsc30347g00011 248 Pfam AP2 domain 101 151 IPR001471 GO:0003700|GO:0006355
Stsc30347g00011 248 SMART rav1_2 101 165 IPR001471 GO:0003700|GO:0006355
Stsc30347g00011 248 SUPERFAMILY DNA-binding domain 101 161 IPR016177 GO:0003677
Stsc30347g00011 248 Gene3D AP2/ERF domain 100 162 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30347g00011 Stsc-Chr30347 73552 74298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30347g00011 46 241 AP2-EREBP Transcription Factor Family AT5G51190 51.244 2.21e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30347g00011 AP2 1.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30347g00011 K09286 - gmx:100795866 243.047