Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30346g00005 ATGTTGTCTTCCAATGGATCTTGTGAAATAGATGTGTGGCCTTTTCTTCAAAATTTGGCCAGTGATGTTATTTCTCGAGCAGCATTTGGAAGTAGTTATGAAGAAGGAATACGAATATTTGAACTTCAAAAAGAACAACTTAAACTTACAATGGAAGTTATAACGAAAATCTACATTCCTGGATGGAGGTTTTTACCCACTCCTATCAATAGGAGGATGAAGAAAATTGACAGACTTATAAAGGCTTCACTTAAGGATATAATTAACAAGAAAGAAAAAGCACTAAAAGCAGGGGAGACAAGTAAAGATGACTTACTGGGAATATTGTTGGAATCAAATCACAAGGAAATTGAAGAGCATGGAAACAAGAAGAACATTGGAATGAGTCTTGAAGATGTAATTGATGAATGTAAATTGTTCTATTTTGCTGGGCAAGAGACAACTTCAGTTTTGCTTGTTTGGACAATGGTGTTACTCAGTAAGCATTCTTATTGGCAAGAAAGAGCAAGGGAGGAAGTCTTGCAGGTCTTTGGTACCCAGAAACCACACCTTGATGGCTTAAATCGCCTTAAAATTGTCTCTATGATATTATATGAGGTTCTGAGATTATATCCACCAGTACTTGGACTTACTCGAAGTACAGACAAAGATATGAAACTTGGAGAGATAACATTACCCGAAGGAGTTCATATTTTCATGCCAATTGTTTTTGTTCACCATGATTTTGGACTTTGGGGTGATGATGCAAAGCGATTCAACCCTGAAAGATTTTCTGAAGGAATTTTTAAGGCTACAAATGGAAAAGCTTCTTTCTTCCCATTTGGATGGGGTCCTAGAATATGCATTGGACAAAACTTCTCCCTAATGGAAGCAAAGTTGGCTTTATCATTGATTCTACAACATTTTTCTTTTGAACTTTCTCCTTCTTATGCTCATGCTCCGATGGCTATGGCTACGCTTCATCCACAACATGGTGCTCATATCATTTTACGTAAGGTTAAAATATAA 1008 0.3651 MLSSNGSCEIDVWPFLQNLASDVISRAAFGSSYEEGIRIFELQKEQLKLTMEVITKIYIPGWRFLPTPINRRMKKIDRLIKASLKDIINKKEKALKAGETSKDDLLGILLESNHKEIEEHGNKKNIGMSLEDVIDECKLFYFAGQETTSVLLVWTMVLLSKHSYWQERAREEVLQVFGTQKPHLDGLNRLKIVSMILYEVLRLYPPVLGLTRSTDKDMKLGEITLPEGVHIFMPIVFVHHDFGLWGDDAKRFNPERFSEGIFKATNGKASFFPFGWGPRICIGQNFSLMEAKLALSLILQHFSFELSPSYAHAPMAMATLHPQHGAHIILRKVKI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30346g00005 335 Pfam Cytochrome P450 9 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 Gene3D Cytochrome P450 2 334 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PANTHER CYTOCHROME P450 FAMILY MEMBER 5 326 - -
Stsc30346g00005 335 PRINTS P450 superfamily signature 143 160 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS P450 superfamily signature 195 206 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS P450 superfamily signature 272 281 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS P450 superfamily signature 281 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 274 283 IPR017972 GO:0005506|GO:0016705
Stsc30346g00005 335 PRINTS E-class P450 group I signature 132 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS E-class P450 group I signature 19 37 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS E-class P450 group I signature 152 178 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS E-class P450 group I signature 281 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 PRINTS E-class P450 group I signature 271 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30346g00005 335 SUPERFAMILY Cytochrome P450 5 331 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30346g00005 Stsc-Chr30346 25605 27755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30346g00005 1 333 Cytochrome P450 AT3G14680 62.275 7.28e-150 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30346g00005 - - gmx:100808323 538.495