Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30345g00010 ATGGCAAAGGGTGATGATGTCGTGAGAAGGAAGAAGAACAAAGCCATTTGCAAAAAGCTCAGAAGAAAGAATGATTCTTCCACTGTCTCTGCCAAGGCAGCCGCAGCTATTGCCGCCAAGAAGCGCCGCAAGGCCGGTAAACGCCGCATGTGCCAGGGAATGTGCTTTAGTCTGCCTTCTCCAGATGATCCATTCAATGATCGTCATGGGAAAGAGGAACTCAAAAGAAAAGCTCCTGGAAAGAAAAAACTCGCCACAAAAGAAAAGGCTCCTCGTAAAGAGGAGAGTGCAGCTAAAAGGGAAAACACATTTGGGGGGAATATTTCTAAGAAACCAAATTGTTTGCAAGTGGAAAATGAGCCCATCATTGAGGTGCCCGACATGGCTGACCGTTGTGGTGGTTCTCAACGACAAAATTGCAAATTGTCAGAGTTGCCTTCTAAGTTTGTCTTTATGTGTCTAAGTTCAATTGAAAATGCATTGTGCCATGATGACGCCTATTCTGATCAAGAGGATAACATTTTGTCTGTTGACTCATGGGGATTAGAGTTTCTAAAGTGTTATTCTACCGGGAAAGATCTGATAGAAACCAGTGGAACCTCTGTCACTACCGAGCAGGTTGCTTGGATTGTTTCTGGTGCAGCTGATACGTTTGTGAGAAAAGAGAAGCAAGGCTTATCTTTTGCCAGTCCTTTCCTTTTATTCCTTGTACCTTCACAAGAAAAAGCTTTACAGGTCAGAACAGTGTGCAAGCCTTTGAAATCAGTAGGAATACATACAGTGAGTATACATTCAGGTGCTGCTGTAGATCATCAAATTCAAGGGTTGAAAAGTTGTGAACCTGAGTTTCTTGTTTCTACTCCAGAGAGATTAATGGAGCTTCTATCATTGAAGGCTATTGACATATCTGATGTCTCCATATTGGTTGTTGATGGGCTTAGTACTATTTGTTGTGCTGGTTACGCTGATACTATTAAATCCATCAAGACATTTATTTCTAGTGATCCTCATGTTTTGGTTTTCAATGACTCCTTTAAGCATGATTCTATCCCAATGGTTCGGCATCTTCTAAATGGGCCAATTTGTAGACTCTCACTCAGTGATACAATTACCAGCCTAAGTTCATGCATTATCCAGTCTGTCCAAGTGTGTACAACAGAACAAGATAAGCTTCGTAAGAGCACCGAAGCCCTTGATCAATTTCGGAGCAGCTCTTCTCAGAATTCAAAAATGCTATATATCTTGAGGAAAGAAATCAAGTGTAGTAAGTTGGTCAAAACTCTCAAAGCCCAGGGTTGTTGCATTTCACTTGATTCCAATGACAGAGTGGATTCAAACAGCAGATCAGGACCAGTGGTTTCTGCAATAGATTTGGAGCATCTTTCTACTACAGAGATAGAGCAGTATGATGTTGTAGTCTTACCTAGTTTTGTACCATCCATGGACACTTATATCCATATTTTGACAAATATGGCACGCGAAAGTGTCAATGGTGTTCTGCACAGTTTCTTAACAGCAGAAGACAGAGAACTAGCCGGACAGCTTATCGGCATTCTTGAACAATGTGAGCAGGAAGTACCTGAAGCCTTGCAAGATCTTCATCATAAATCAGAGATGAAAGAATGA 1626 0.4151 MAKGDDVVRRKKNKAICKKLRRKNDSSTVSAKAAAAIAAKKRRKAGKRRMCQGMCFSLPSPDDPFNDRHGKEELKRKAPGKKKLATKEKAPRKEESAAKRENTFGGNISKKPNCLQVENEPIIEVPDMADRCGGSQRQNCKLSELPSKFVFMCLSSIENALCHDDAYSDQEDNILSVDSWGLEFLKCYSTGKDLIETSGTSVTTEQVAWIVSGAADTFVRKEKQGLSFASPFLLFLVPSQEKALQVRTVCKPLKSVGIHTVSIHSGAAVDHQIQGLKSCEPEFLVSTPERLMELLSLKAIDISDVSILVVDGLSTICCAGYADTIKSIKTFISSDPHVLVFNDSFKHDSIPMVRHLLNGPICRLSLSDTITSLSSCIIQSVQVCTTEQDKLRKSTEALDQFRSSSSQNSKMLYILRKEIKCSKLVKTLKAQGCCISLDSNDRVDSNSRSGPVVSAIDLEHLSTTEIEQYDVVVLPSFVPSMDTYIHILTNMARESVNGVLHSFLTAEDRELAGQLIGILEQCEQEVPEALQDLHHKSEMKE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30345g00010 541 Gene3D - 193 370 IPR027417 -
Stsc30345g00010 541 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 12 517 - -
Stsc30345g00010 541 MobiDBLite consensus disorder prediction 60 103 - -
Stsc30345g00010 541 Pfam DEAD/DEAH box helicase 229 332 IPR011545 GO:0003676|GO:0005524
Stsc30345g00010 541 MobiDBLite consensus disorder prediction 64 100 - -
Stsc30345g00010 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30345g00010 Stsc-Chr30345 70423 81374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30345g00010 234 533 Eukaryotic Initiation Factors Gene Family AT1G72730 21.935 5.30e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30345g00010 - - adu:107477540 915.22