Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30345g00006 ATGATTGTTGCTGAATGTTTTTCAGAAGCCCTAAAGAACCGGTGGGAGGCGGTGGCTGCTCGTTTCCCCGGGAAGACCCCCGCGCAGCTACAACTTCACTTCCAAGAGCTTCTGAATGACGTCAATCTCATCAGAGACGGTTGTGCATGGCCTCCACAGATGGCAACAGACATCACATTCCAACACAACCCTCTTTCTATCCCCATCATCAATCATCAACAACACATGACTACGGTCATAGCGGATAAGGCGGTGCCACCAGAGATTATGTTACCATCGTCAGCCATGGCGGCAGCAGAAAGGGAACAAAACCAACCTGCCAACAACAACAGAATTGAACACAGACCTTTACGTAGGGCTACTGGCAAGAAGAATAACAGAAAAGTAGAGCATTGGACTAAAGAAGAGCATCGGTTGTTTGTTACAGGACTTGATAAGTTTGGAAGATCAAAGTGGAAAGAGATTTCAAGACTTTATATTAGAACAAAAAATCCCATGCAAGTTGCTACTCATGCTTGA 519 0.4566 MIVAECFSEALKNRWEAVAARFPGKTPAQLQLHFQELLNDVNLIRDGCAWPPQMATDITFQHNPLSIPIINHQQHMTTVIADKAVPPEIMLPSSAMAAAEREQNQPANNNRIEHRPLRRATGKKNNRKVEHWTKEEHRLFVTGLDKFGRSKWKEISRLYIRTKNPMQVATHA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30345g00006 172 Pfam Myb-like DNA-binding domain 131 168 IPR001005 -
Stsc30345g00006 172 NCBIfam myb-like DNA-binding domain, SHAQKYF class 130 172 IPR006447 GO:0003677
Stsc30345g00006 172 Gene3D - 3 49 - -
Stsc30345g00006 172 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 172 IPR043363 -
Stsc30345g00006 172 ProSiteProfiles SANT domain profile. 132 172 IPR017884 -
Stsc30345g00006 172 ProSiteProfiles Myb-like domain profile. 124 172 IPR001005 -
Stsc30345g00006 172 Gene3D - 130 172 - -
Stsc30345g00006 172 SUPERFAMILY Homeodomain-like 127 172 IPR009057 -
Stsc30345g00006 172 CDD SANT 132 172 IPR001005 -
Stsc30345g00006 172 CDD SANT 12 38 IPR001005 -
Stsc30345g00006 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 172 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30345g00006 Stsc-Chr30345 43059 43889 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30345g00006 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30345g00006 - - ahf:112708481 121.324