LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30345g00001	ATGTCGAACCCTCCTACAACTGAAGTTGACCTTAGTCCTGAGAAGGTTCCAGAGAAGATTGAAGAAGATGATAAAGTTCCAGGTCCCATGCTCCATTGTGGTATTTGTGATACAGAAGTAGTTCACAAGCTGGCTGAAATGTTCCTTCCAGGATTGGCTTGTGCCTGTGTCGATAACACGACCGGATATCCCTTCTCCACACCCGGTTCGGTCGCAGTTAATTTCAAAAATGAAATGATAGATTATATCACACAAAGAAGTGAATCCTTTGTTGCTGAGTCTGTAATCTTAGAAGGTGATCCACAAGGTGAAGTATTGGATCATCCTTTTGATGTTATTTCTTATTTTGTTGACGAGTTTGTTATTTCAAAGAGGAATATTGTTAGTCAGGTCTCCGGTTGGGTGTTAAGTGATTGGAGAGAAGACAAAGTAGATGATTTTATTCAGGAGATGGAAATGAATGGATTTTGGTCCCTTGATAGAAGAGAAACTCTTGCAAAGTCTTTGCTTAAGAATGTCGATTTCAAGAATGCATATCACTGCAATGAGAGTTTTCATTCTCAGCAAGAGCTTGACAATCATGTTGATGGTTGCAACTTTAGAACTGCATTCTGTCAAAATGAGGGATGTGATGCCATGTTCTGCACAATTCATTTCGAGCAGCACGACTCGAGTTGTCCTTTCAAGGTAATCCCATGTGAACAGAAGTGCTCCGATAGCATTATGAGGCGCGATATGGACAGGCATTGCATAACTGTTTGTCCAATGAAGATTGTGAATTGTCCGTTTTATGGAGTGGGTTGTAGAGCTGCCGTTGCTCAATGTATGATCCAAAAACATTGCTCGGACGACGTTAAGTCACACTTGATGCACGTGCTTACGGGCATCCACAGGGAAGCAACTGCTGAAGATCTCAGCAGACGAGTGGAGAAAGTTATGCAGGTATCATCAGGCACCAGGTTAGCAGAGGCTCGCGACATGAGAATGTTCAAATCTATTGTCAAGAATCTTGAAGCAAATTTAGGGCCTATGGAAGTAACACCCAAGAATGGAGATGATCAAGAAAAAGAGCAAGCAGCAGCTTCTCTAAGCGCCTCGTCAAATCTCAGGATGGATACTGGCATAAAGCATGCTGTTGTCGTCAAGGTTATGGGTCGCACCGGGTCTAGAGGGCAAGTGACCCAGGTTAGAGTCAAGTTTCTGGATGATCAGAACCGTCACATCATGAGGAACGTGAAGGGACCGGTGAGAGAAGGTGACATTCTCAGCCTACTTGAGTCTGAGAGAGAAGCAAGAAGGTTGCGCTAG	1308	0.4358	MSNPPTTEVDLSPEKVPEKIEEDDKVPGPMLHCGICDTEVVHKLAEMFLPGLACACVDNTTGYPFSTPGSVAVNFKNEMIDYITQRSESFVAESVILEGDPQGEVLDHPFDVISYFVDEFVISKRNIVSQVSGWVLSDWREDKVDDFIQEMEMNGFWSLDRRETLAKSLLKNVDFKNAYHCNESFHSQQELDNHVDGCNFRTAFCQNEGCDAMFCTIHFEQHDSSCPFKVIPCEQKCSDSIMRRDMDRHCITVCPMKIVNCPFYGVGCRAAVAQCMIQKHCSDDVKSHLMHVLTGIHREATAEDLSRRVEKVMQVSSGTRLAEARDMRMFKSIVKNLEANLGPMEVTPKNGDDQEKEQAAASLSASSNLRMDTGIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILSLLESEREARRLR	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30345g00001	435	Pfam	Ribosomal protein S28e	375	434	IPR000289	GO:0003735\|GO:0005840\|GO:0006412
	Stsc30345g00001	435	Hamap	30S ribosomal protein S28e [rps28e].	371	435	IPR000289	GO:0003735\|GO:0005840\|GO:0006412
	Stsc30345g00001	435	ProSitePatterns	Ribosomal protein S28e signature.	426	434	IPR028626	-
	Stsc30345g00001	435	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	221	287	IPR013083	-
	Stsc30345g00001	435	MobiDBLite	consensus disorder prediction	344	365	-	-
	Stsc30345g00001	435	PANTHER	TNF RECEPTOR ASSOCIATED FACTOR	31	365	-	-
	Stsc30345g00001	435	Gene3D	-	368	435	IPR012340	-
	Stsc30345g00001	435	Pfam	TRAF-type zinc finger	222	280	IPR001293	GO:0008270
	Stsc30345g00001	435	SUPERFAMILY	Nucleic acid-binding proteins	372	435	IPR012340	-
	Stsc30345g00001	435	FunFam	40S ribosomal protein S28	370	435	-	-
	Stsc30345g00001	435	MobiDBLite	consensus disorder prediction	1	23	-	-
	Stsc30345g00001	435	ProSiteProfiles	Zinc finger TRAF-type profile.	222	278	IPR001293	GO:0008270
	Stsc30345g00001	435	CDD	S1_S28E	376	435	IPR000289	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30345g00001	Stsc-Chr30345	16958	21103	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30345g00001	371	435	Cytoplasmic Ribosomal Protein Gene Family	AT5G03850	87.692	2.60e-31	112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30345g00001	-		-	gmx:100802183	518.464