Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30344g00006 ATGGAGCAAGCTGAATTGGACACCTCAAAATCGCTGAGTTTCCCTCCATACCGTCGATCACACTTACACAGTGAAACCTACCTCACTCTCATTCGAATATTCTCTCATCTTCCGGCCACACCTGTGGTGGAAAGAAGCCAGAGAAAAAAGAAAAGGAACCTGAGTTCTCTGAATTTGTTGGTTCTGATTTTATACATCACAAGGATGCTGTCCCCGAGAAAAAAATACAGGAATTTGACGAGACCGTTGAAGGGGCTGAAAAACAAGGACAGGGAGTGTGTTGTCAATGATATTGTTCTGGGTGATATAGAAGAGATAATGGGAATAGAGGAAGTCGAGGAAGCTTCAAGAACAATTCTGCAGGACAGGTGTAACGATGCGGATAAAGAGCAACAGAGGATAATGGATGAGTTAGAACTGGCTGTGAATGGAACACAAAATATCGTTTGTGATGGTGGTGTAATCTTTTCGGGTGTGTTGTCAGGTGAGAAACAGAATGACAGCAGGGTAGTTGAGTTGATGGATTACCGATTGGAGAATGATGAGTTTCTGCATTCTGATGTAAAAAAATGTGGTAATGCAGGTGATATGCAAGTTCAAGGCTCGCGTGATCAAATTCTCTCGACATCAATGCAAGAACAAACCTCTGCATTGGTAACTAGTACATCTAATATAAACCATGAGAATGAAATGAAAATGGTTTGTGCTGCAATGGATTCTCTCCCAAATTCGAAAGGTGAAGTTGGGAAGAAAAAAAAGCGGAGAAAACGAGCAGAAAAGAACAAGCAACTTGGTGTGAAAAGGTTGAAGTTGCCTCTAGTACAACAGAAACCAAAAACAATCAATTATTGTCGCCATTTTCTTGTTGGAAGATGCTATGAGGGTGACAAGTGCCAGTTTTCACATGATACAGTGCCTTCTACCAAATCATCGCCATGCTCCTTTTTTGCTCGTCACTCCTGCATGAAAGGAGACGACTGTCCTTTTGATCATCAACTTTCCAAGTATCCATGTGATAACTTTGTGTCCAGAGGCTTTTGTGCAAGAGGTGATGTGTGTTTGTTTTCACACAAGCTTGAGGGTAAATTCTCCAAAAGGCTGCTGGTAGATGGGTGCAAGAGGTTCAGGGACAGTTCTTTACCAGCCAAGGAAGACATTCCTACAGCTTCAAAGGTTTGCAAACCAGGAACGAAATCACCACACTTTTCAGGAAACACAAATTTCAACATGCCACCTAACATTCATGGCTATAGTTCTATCCAACAGAACCATTTAATCAATTCTCCAAGAGTTCTTTCTCACATCAATTTGGAACATAAAGTGACAAACACTGTACAGAAACAGCCTAAGCTTGCATCTAAAGGAGTTAGCTTTATCGATGTTGCAAAGCTATCATCGCCTACTCCTACTACACCAAAAGAAGGCATGACCAAAGTTGGCTCATCCTCTGCTGACCAAAGTACGTCTGGAACAAATCAAACCTCAGTGGAAATTCCAAAGAAATTGCCACCTAGGGTTCCGAAAGGAATTAACTTTCTTGCTTTTGGGAAAGATCCTGTGAACAGTTTTAAGAGTTCTTTCAAGTCCCTTGTAAATGCAGAAAATGGTATTGATGTGCTCCAGATTATAAGTTTCGGTTTGCTTGATCATAATAATTCATCCATAAAAGTGGATGATGGCAGCAAAGATATTGATGGAACAAAAGGAAGGATACCACAGACTGATTTAGTCTCCAGTGAGATTTTTGAGAAAAATCAATCTGTGGCAGAAAGTATAAAATTGAGTTTCCCGGGGAAAGCTTCGATGACTGATGCTTCAACTGGTTTACAAGGTAGCCCTCATGTGGATGATAATAAAAGTAAACCGGTACAAGAGGCAAAAGGGGCGACTGATCTTTTCCAAACTTCCACCGCGGCGCCATTTATGCTTCTGGTTTCCCCTTTATCTTCAGAACAGCTACCATCTAGAAAGGAGCTCGTGTCGACTTTATTATCATTTGCAGCAGAGCATGAATTAGTTATCAAGAAGAAAGATTCTGCTGGTACTTCAACTGCATAA 2058 0.4111 MEQAELDTSKSLSFPPYRRSHLHSETYLTLIRIFSHLPATPVVERSQRKKKRNLSSLNLLVLILYITRMLSPRKKYRNLTRPLKGLKNKDRECVVNDIVLGDIEEIMGIEEVEEASRTILQDRCNDADKEQQRIMDELELAVNGTQNIVCDGGVIFSGVLSGEKQNDSRVVELMDYRLENDEFLHSDVKKCGNAGDMQVQGSRDQILSTSMQEQTSALVTSTSNINHENEMKMVCAAMDSLPNSKGEVGKKKKRRKRAEKNKQLGVKRLKLPLVQQKPKTINYCRHFLVGRCYEGDKCQFSHDTVPSTKSSPCSFFARHSCMKGDDCPFDHQLSKYPCDNFVSRGFCARGDVCLFSHKLEGKFSKRLLVDGCKRFRDSSLPAKEDIPTASKVCKPGTKSPHFSGNTNFNMPPNIHGYSSIQQNHLINSPRVLSHINLEHKVTNTVQKQPKLASKGVSFIDVAKLSSPTPTTPKEGMTKVGSSSADQSTSGTNQTSVEIPKKLPPRVPKGINFLAFGKDPVNSFKSSFKSLVNAENGIDVLQIISFGLLDHNNSSIKVDDGSKDIDGTKGRIPQTDLVSSEIFEKNQSVAESIKLSFPGKASMTDASTGLQGSPHVDDNKSKPVQEAKGATDLFQTSTAAPFMLLVSPLSSEQLPSRKELVSTLLSFAAEHELVIKKKDSAGTSTA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30344g00006 685 MobiDBLite consensus disorder prediction 465 502 - -
Stsc30344g00006 685 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 238 528 IPR045124 GO:0003723|GO:0045892
Stsc30344g00006 685 ProSiteProfiles Zinc finger C3H1-type profile. 278 305 IPR000571 GO:0046872
Stsc30344g00006 685 ProSiteProfiles Zinc finger C3H1-type profile. 307 334 IPR000571 GO:0046872
Stsc30344g00006 685 ProSiteProfiles Zinc finger C3H1-type profile. 337 360 IPR000571 GO:0046872
Stsc30344g00006 685 SMART c3hfinal6 279 304 IPR000571 GO:0046872
Stsc30344g00006 685 SMART c3hfinal6 335 359 IPR000571 GO:0046872
Stsc30344g00006 685 SMART c3hfinal6 307 333 IPR000571 GO:0046872
Stsc30344g00006 685 Pfam CCCH-type zinc finger 284 303 IPR041367 -
Stsc30344g00006 685 SUPERFAMILY CCCH zinc finger 278 303 IPR036855 GO:0046872
Stsc30344g00006 685 MobiDBLite consensus disorder prediction 603 622 - -
Stsc30344g00006 685 MobiDBLite consensus disorder prediction 465 498 - -
Stsc30344g00006 685 Gene3D - 273 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30344g00006 Stsc-Chr30344 32244 36273 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30344g00006 zf-CCCH_4 3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30344g00006 - - adu:107464618 622.468