Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30342g00007 ATGATGGACGCATACTCCTCTGGAGAGGAAGTGGTTATTAAGACAAGGAAACCTTATACAATCACCAAGCAAAGAGAACGATGGACTGAGGAGGAGCATAACCGGTTTCTAGAAGCTTTGAAGCTCCATGGGCGGGCATGGCAGCGAATAGAAGAGCACATTGGAACGAAAACTGCCGTGCAGATCAGGAGCCATGCACAGAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCAGGCAAAGGGTGTTCCAATTGGACAAGCTATTGATATAGAAATCCCCCCTCCACGGCCCAAAAGAAAACCGAGCAATCCTTATCCTCGGAAGACCAGTGCTGGTGCTGCATCATTGCATAGTGGAGCAAAGGATGGAAAACTAAGTTCTCTTGAATCTTCACATGCTAAACAATTACTGGACTTGGAAAAGGAACCAGTTCCAGAGGAGGCACCGTGTTCTTCGTCGGTTTCTTCAGCAAACAAGAGTTCAATATCATTGTCAGTGCCACTGCGAAACTCATGCGCCTTAAGGGAGATTATACCTTCAGTGAAAGAGGTAATAGCTAAAGATGGAAGAAATAAATCTTTTGTTACTATTGAACTTGAAAACCGGAAGTTGGAGATAGATGATGGCAAACAGACTAATGGGAACTCCAGTTTGGAGAATTCTGATACAATGAAATTGGTTCATAATGAAGAAACAGATGGTCTTAACTGTGCATTAACCATAGATGGGATACAAGGCAATCAGAATTATCCGAGACATGTTACTGTACACGTTGTTGATGGAAAACTCGGAACAAGTACTCCAAATCCATCCCAAGATATGGTGTTTCAAGATTCTATGTTTCAGCCACTAGGAGGGATTAATGGGCAACCTAATCTTTTCACCAATTCAAATGCATCCAACACAAGTGAGAGCCAAAACAACACAGCAAGATCTTCTGTTCATCAACCATTTCTTCCTTACCCTCCCTTCACACAAAATAATCAAGACGATTACCAATCATTTCTTCAAATGTCTTCCACATTTTCAAGTCTTATTGTGTCTACCTTGCTGCAAAACCCAGCAGCACATGCTGCTGCAAGTTTTGCAGCTACTTTCTGGCCTTGTGCAAATTCAGAAGCTTNNNNNNNNNNAGCAGATTCTCCTACATGTTCTCAAGGAGGTTTTCCACCTAGACAGAATGGCTCTCCTCCAAGTGTGGCGGCTATCGCAGCCGCCACTGTAGCTGCTGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTCTGTGTGCTCCCCTCCATACTGCTTTTCCTTGTCCTCCAACATCAATGGCTGCAGTTCCATCAATGAATACCGGCGAAGCACCAGCACAAGTAGTACAAGCACCGGCCCCAATACCAACATCAAAGACAGAACAAGAGCAGAATATTCTGCTGCAAAATCCTCCTCAGCAGGATCAGACACTTGATCCTGTATGCTCAGAAGCTCAACAAGCACAACAGTCACCTTCTAAGTCCCCAGATGCTGCTTCATCAGATTCTGAGGAGAGTGGAGATGCCAAGTTACATGCTTCGCTGTCCAAGGCTACTGATCAAGAAGAGGTGAACAAAGAAATATCTGAGCACATTGATTCCAACAAAGCAAAAGGTAGAAAGCCAGTTGACCGATCTTCATGTGGTTCCAACACAACATCTAGCAGTGAATTGGAGACTGATGCATTAGAGAAGGATGAGCAAGGGAAGGAAGAGCCTGAAACAGCTGATGCTAACAATTTAGCCATTGAGTCTAGTAACCGCCGTAGTAGAAGTGTTAGCAACCTTACTGATTCTTGGAAAGAGGTCTCCGAAGAGGGGCGACTGGCCTTTCAGGCTCTCTTCGCCAGAGAGGTGTTGCCACAAAGCTTTTCGCCTCCGCCGGATTTGAAAATCAAGGATCAGGAAATGGACAGCATCAAGGATAACAAGCAAACCACAGATATCAAGGATGAAGGCCAAGACAGCAAGAAATGCAGTTCTATTTCCGAGGGGACTCAGAAAATGATGCCGTGTATAGAAAGCAACGAGGAAGAGGGACTGCTAACCATAGGACTTGGACAAGGAAAGCTCAAGACTCGTCGAACCGGCTTCAAACCTTACAAAAGATGTTCAATGGAGGCGAAGGAGAACCGGGTTGGAAGCACCGGCAACCAAGGTGAAGAGCAAGGTTCAAAAAGAATACGCTTAGAAGGGGAGGCTTCAACTTGA 2226 0.4506 MMDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAQAKGVPIGQAIDIEIPPPRPKRKPSNPYPRKTSAGAASLHSGAKDGKLSSLESSHAKQLLDLEKEPVPEEAPCSSSVSSANKSSISLSVPLRNSCALREIIPSVKEVIAKDGRNKSFVTIELENRKLEIDDGKQTNGNSSLENSDTMKLVHNEETDGLNCALTIDGIQGNQNYPRHVTVHVVDGKLGTSTPNPSQDMVFQDSMFQPLGGINGQPNLFTNSNASNTSESQNNTARSSVHQPFLPYPPFTQNNQDDYQSFLQMSSTFSSLIVSTLLQNPAAHAAASFAATFWPCANSEAXXXXADSPTCSQGGFPPRQNGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFPCPPTSMAAVPSMNTGEAPAQVVQAPAPIPTSKTEQEQNILLQNPPQQDQTLDPVCSEAQQAQQSPSKSPDAASSDSEESGDAKLHASLSKATDQEEVNKEISEHIDSNKAKGRKPVDRSSCGSNTTSSSELETDALEKDEQGKEEPETADANNLAIESSNRRSRSVSNLTDSWKEVSEEGRLAFQALFAREVLPQSFSPPPDLKIKDQEMDSIKDNKQTTDIKDEGQDSKKCSSISEGTQKMMPCIESNEEEGLLTIGLGQGKLKTRRTGFKPYKRCSMEAKENRVGSTGNQGEEQGSKRIRLEGEAST 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30342g00007 741 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 84 156 - -
Stsc30342g00007 741 NCBIfam myb-like DNA-binding domain, SHAQKYF class 23 72 IPR006447 GO:0003677
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 584 605 - -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 287 326 - -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 711 741 - -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 506 548 - -
Stsc30342g00007 741 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Stsc30342g00007 741 FunFam protein REVEILLE 6 isoform X1 27 75 - -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 458 505 - -
Stsc30342g00007 741 Pfam Myb-like DNA-binding domain 25 68 IPR001005 -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 636 663 - -
Stsc30342g00007 741 CDD SANT 27 70 IPR001005 -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 450 607 - -
Stsc30342g00007 741 ProSiteProfiles SANT domain profile. 23 74 IPR017884 -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 377 398 - -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 622 668 - -
Stsc30342g00007 741 MobiDBLite consensus disorder prediction 564 579 - -
Stsc30342g00007 741 Gene3D - 27 74 - -
Stsc30342g00007 741 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Stsc30342g00007 741 SMART sant 24 72 IPR001005 -
Stsc30342g00007 741 PANTHER SWI/SNF COMPLEX-RELATED 8 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30342g00007 Stsc-Chr30342 59548 65841 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30342g00007 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30342g00007 K12133 - gmx:100101859 983.786