Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30341g00013 ATGGAATCTCTAGGAGCATTCTCTAATAATAATGTAGAATTTGATTGCTTCAAAATGTTTTCTACTGAAAAAGAGAATGATTTCACTTACACTACTTCATCATCACAATTATTTCTTGATCAATGTTCATCACTTCTTCTAGTAGAAGATGATGATGAATTGATGAAGTTTGGATTAGTGCAATCCACATTTTTTTCCAATCTTAGTGATGAAAATTTGCAATATATTTCACAAGAGAGTAGTTACAATAGCAGCAATAGTAGTCACAACATGGATCTTGTTACAACAAACTACTACTATTCTAGTAATTACCAAGATCATGTGCTAGCAAATGATGCTTCTATATCCATGGATTATTTATGTATGGATGAGAAGAATCTTGCAGCATGTTTTGCTCCATCAATGAATGAGATTGTTGTAATGGAAGACAATGTCAAGTTCAATGAGAATAATAATGTGGGAAGTAGTGATCATCATTATCAATGTCAAATGGAACATGTTGATGATGTTGTTCCAACCAATAAGCTGTTGCATCTCAAGAGGAAGATTATTGAAGTACCAGGATTATTTGATGCGTCTGCTGAAGACAATACAAGCATTAGATCCGAGAATCAAAAGAAAAAACACCGGGTTGGGAAACATGTACAGTTGCAAGGTTGCATGAAAAATGGAAGGTCCAAGAAGAAAAAAGTTGTCAGAAATGGCAATGAGGGAGAAGAGAGTAATAATGATAAAAATGTAGTATTAGATGGACAGAGCTCAAGTAGTAACATATCTGAGGATGACAATGCTTCCCAAGAAAACAACAATGGAGGGGCAACTTCGGTATCTCACTCAAATAATAATAGCAAAATAAGAACCACTAGAGGAACAGCAACAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAAAGGATAAATGAACGATTAAGGATTTTGCAGAATCTTGTTCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAACTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGACGATTTATGGATGTATGCTCCCCTTGCTTATAATGGGCTTGATATTGGACTCAAACTCAATAATAACCTTAAGAATTTTCCTTTTCCATCATCACTATGA 1149 0.3481 MESLGAFSNNNVEFDCFKMFSTEKENDFTYTTSSSQLFLDQCSSLLLVEDDDELMKFGLVQSTFFSNLSDENLQYISQESSYNSSNSSHNMDLVTTNYYYSSNYQDHVLANDASISMDYLCMDEKNLAACFAPSMNEIVVMEDNVKFNENNNVGSSDHHYQCQMEHVDDVVPTNKLLHLKRKIIEVPGLFDASAEDNTSIRSENQKKKHRVGKHVQLQGCMKNGRSKKKKVVRNGNEGEESNNDKNVVLDGQSSSSNISEDDNASQENNNGGATSVSHSNNNSKIRTTRGTATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLKLNNNLKNFPFPSSL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30341g00013 382 MobiDBLite consensus disorder prediction 245 295 - -
Stsc30341g00013 382 Gene3D - 293 349 IPR036638 GO:0046983
Stsc30341g00013 382 FunFam Basic helix-loop-helix transcription factor 292 349 - -
Stsc30341g00013 382 MobiDBLite consensus disorder prediction 230 244 - -
Stsc30341g00013 382 Pfam Helix-loop-helix DNA-binding domain 301 341 IPR011598 GO:0046983
Stsc30341g00013 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Stsc30341g00013 382 CDD bHLH_AtIND_like 292 354 - -
Stsc30341g00013 382 MobiDBLite consensus disorder prediction 194 298 - -
Stsc30341g00013 382 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 363 - -
Stsc30341g00013 382 SMART finulus 297 346 IPR011598 GO:0046983
Stsc30341g00013 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 355 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30341g00013 Stsc-Chr30341 80769 82753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30341g00013 227 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 66.667 1.30e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30341g00013 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30341g00013 - - aip:107648570 399.823