Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30341g00001 ATGGTCAAATATTCAATACGCACACGTGTCATCACCTCACTTAAACACTTCGTTACACTTGTAAAATCTCCATACCTCTCCCTCTCATATATTCGCACCTTTCTCTTTTGCCCTTCTGCCCTTCTATCACAACGAAAAAACAAACCACTTCACAAGAAAACTCGATTCCACAAAAATCCCAACCCAAACCCGAATCCCCTGGACCGGGTTAGGACCAACCGATACTCTTTGCCCGAAAAAATCGGTGCCATAGCGCTCACCATGGGAACCGAGGGCACCACAAACTATACCTACTTCGGGCGAAGCATCAGCCAGCTCAGCATCAACGACGAGTCCTCTTCCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGGCGAATTCTCCGCCGCCTCCTCCCAGACTCGCCGCTTCCTACTTGCCTGCGCCGCTGACAACTCCGACGATTTAATCCGCCAGCTCGTCTCCGATCTAGGCTCCGATTCCGTCCATGAGCAAAAACAAGCCGCCATGGAGATCCGCCTCCTCGCGAAGAACAAACCAGAGAATCGAATCAGAATCGCCAAAGCCGGCGCGATCAAACCGTTAATTTCGCTTATTTCGTCGCAAGACCTTCAAGTTCAGGAGTACGGCGTCACGGCGATCCTGAACTTATCCCTCTGCGACGAGAACAAGGACGCCATCGCTTCCGCCGGCGCGATTCGACCTCTGGTTCGTGCGCTGACTTCGGGAAATTCAACGGCGAAGGAAAACGCAGCGTGCGCGCTTCTCCGGCTTTCGCAGGTGGATTCTCACAAGGCTGCAATAGGAAGAGCCGGCGCGATTCCACAGCTTGTGAAGCTTCTAGAAACCGGAAGTAGCCGAGGAAAGAAGGACGCGTCAACTGCGCTGTACTCGCTGTGTTCTACCGTGAAGGAGAACAAGGTGAGGGCGGTGAAGGCAGGGATAATGAGGGTGCTGGTGGAGTTGATGGCGGACCTGGAGGGGGAGATGGTGGACAAGTCTGCGTACGTGGCGAGCGTGGTGGTGACGATGGCGGAGGGGAGGGCAGCGTTTGTGGCGGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTTGGGACACAGAGGCAGAAGGAGATTGCGGTGGTTATACTGTTGCAGGTTTGTGAGGAGAGCGCCGCGTACAGAAAGCTGGTGTTTGACGAAAGCGCTATCCCTCCCTTGGTTGCTTTGTCCCAATCCGGCACCAATCGCGCCAAACAAAAGGCAGAGAAACTAATTGAGCTTCTAAGGCAACCAAGATCCAGCAATGGCAGTGCTCGTGCGTCAGAAGTGACAGGGTAA 1329 0.5433 MVKYSIRTRVITSLKHFVTLVKSPYLSLSYIRTFLFCPSALLSQRKNKPLHKKTRFHKNPNPNPNPLDRVRTNRYSLPEKIGAIALTMGTEGTTNYTYFGRSISQLSINDESSSSAFSDCNSDRSGEFSAASSQTRRFLLACAADNSDDLIRQLVSDLGSDSVHEQKQAAMEIRLLAKNKPENRIRIAKAGAIKPLISLISSQDLQVQEYGVTAILNLSLCDENKDAIASAGAIRPLVRALTSGNSTAKENAACALLRLSQVDSHKAAIGRAGAIPQLVKLLETGSSRGKKDASTALYSLCSTVKENKVRAVKAGIMRVLVELMADLEGEMVDKSAYVASVVVTMAEGRAAFVAEGGIPVLVEIVEVGTQRQKEIAVVILLQVCEESAAYRKLVFDESAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSSNGSARASEVTG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30341g00001 442 SMART arm_5 180 220 IPR000225 GO:0005515
Stsc30341g00001 442 SMART arm_5 262 302 IPR000225 GO:0005515
Stsc30341g00001 442 SMART arm_5 344 385 IPR000225 GO:0005515
Stsc30341g00001 442 SMART arm_5 221 261 IPR000225 GO:0005515
Stsc30341g00001 442 Gene3D - 111 263 IPR011989 -
Stsc30341g00001 442 Pfam Armadillo/beta-catenin-like repeat 181 219 IPR000225 GO:0005515
Stsc30341g00001 442 Pfam Armadillo/beta-catenin-like repeat 265 302 IPR000225 GO:0005515
Stsc30341g00001 442 Pfam Armadillo/beta-catenin-like repeat 222 260 IPR000225 GO:0005515
Stsc30341g00001 442 Gene3D - 343 427 IPR011989 -
Stsc30341g00001 442 PANTHER U BOX DOMAIN-CONTAINING 125 426 - -
Stsc30341g00001 442 Gene3D - 264 339 IPR011989 -
Stsc30341g00001 442 FunFam RING-type E3 ubiquitin transferase 140 431 - -
Stsc30341g00001 442 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Stsc30341g00001 442 SUPERFAMILY ARM repeat 147 423 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30341g00001 Stsc-Chr30341 6841 9726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30341g00001 129 432 U-box Gene Family AT2G23140 48.355 2.29e-79 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30341g00001 - - gmx:100797550 532.332