Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30340g00003 ATGTCTACCGCATCATCGAGCTCTTGGGGTACTGCGCTCGTTAGGATCTCTCCTTACACCTTCTCTGCCGTCGGCATCGCCGTATCCATTGGTGTCTCTGTTCTCGGCGCTGCTTGGGGGATTTACATAACTGGTAGCAGCTTGATCGGTGCTGCAATCAAGGCTCCTCGAATTACTTCCAAGAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCGATTATTCTACAAACAAAATTAGAAAGCGTTCCCAAATCACAGATCTATGCAGCCGAGTCTCTTAGGGCTGGATATGCAATCTTTGCTTCCGGACTTATTGTTGGCTTTGCAAATCTCGTTTGTGGATTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAAAACTCCTCTCTCTTTGTGAAGATTCTTGTGATTGAAATTTTTGGTAGTGCTCTTGGGTTATTTGGAGTTATTGTTGGAATCATTATGTCAGCTCAAGCAACATGGCCAACAAAAGTTTAA 534 0.4345 MSTASSSSWGTALVRISPYTFSAVGIAVSIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKSQIYAAESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30340g00003 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 37 61 IPR000245 GO:0033179|GO:0046961|GO:1902600
Stsc30340g00003 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 146 169 IPR000245 GO:0033179|GO:0046961|GO:1902600
Stsc30340g00003 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 63 87 IPR000245 GO:0033179|GO:0046961|GO:1902600
Stsc30340g00003 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 119 145 IPR000245 GO:0033179|GO:0046961|GO:1902600
Stsc30340g00003 177 SUPERFAMILY F1F0 ATP synthase subunit C 101 168 IPR035921 -
Stsc30340g00003 177 FunFam V-type proton ATPase proteolipid subunit 19 174 - -
Stsc30340g00003 177 SUPERFAMILY F1F0 ATP synthase subunit C 17 86 IPR035921 -
Stsc30340g00003 177 CDD ATP-synt_Vo_c_ATP6F_rpt2 103 167 - -
Stsc30340g00003 177 Gene3D - 19 174 IPR035921 -
Stsc30340g00003 177 CDD ATP-synt_Vo_c_ATP6F_rpt1 21 83 - -
Stsc30340g00003 177 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 171 - -
Stsc30340g00003 177 Pfam ATP synthase subunit C 25 83 IPR002379 GO:0015078|GO:0033177|GO:1902600
Stsc30340g00003 177 Pfam ATP synthase subunit C 108 167 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30340g00003 Stsc-Chr30340 20038 23772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30340g00003 5 176 Primary Pumps ATPases(2) AT2G25610 93.023 5.16e-111 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30340g00003 K03661 - gmx:100527177 309.686