Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30339g00016 ATGGCACTGGCCAAAGACCAAATCCCTCATGATTCAGGCATGGGAAGCAAGGTTCAAAGTTGTGTTTTCAATGAAAATGCTGTGGAGATTACCACCTTAAGGGTTAATGAGTACCACAAATCTGTGCTAGAAGAGGAAGATGGCTCACAAAGCACTAATGGCTTCAGCAATGATTCAGCTATAACCCATTCTCCTCCTTTATGTGGCAATGGCTATACTTATAAGGGCACAAACTATCATCATCTTGAAGAAGAACAACAATCTTTGATTGATTTCAAAGCTAGTTGCTACAACAATCTAACACAAGTAGCTAGTGAATCTTTGCTTAACTTTGAGCAGAACAGAATGGTCCCTGTCAACACTTACATGAAAGATGACATTAGTGTTTGGGAGAACAATTTGCATCATCAATGGAGTCAGATTAGTCCAAGAAACACTTCAGAGCTGAGACCAGTGCAGGATTCAAGTTGCTTCCAGTCTTCTAGTAGTAGCTACAGTGCAAAAGAGAAGCAATTACATGGTGAGAGTTCATCATATGGTTGGCTTTACTCTCATCAAACCATACCTGCTCATCATTGCATCCAGGACCCTGGAGTTCAAGAACCAATATCCAAAAAGCGCATTTCTTTGGCTGAGAACATGAAAGCTGCCAAGAAGCAATGCACAAATGAGAGTAAAATGGCAAAACCCAACAAGTCAGGAGCATCCAAGGATCCTCAAAGTGTGGCTGCTAAGAATAGAAGAGAGAGGATAAGTGAGCGGCTCAAGATACTACAAGAACTAGTTCCCAATGGCTCCAAAGTTGATTTGGTTACAATGCTGGAGAAAGCAATTAGCTATGTGAAGTTTCTTCAGCTTCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTTCAAGGTGGAAAAGCTCCTGATATCTCTCAAGTAAAGGAAGCCATTGATGCCATTCTTTCATCCCAAAGATCAGAGAAAGAAGTTCAACCTCAAAGTAGATGA 999 0.4124 MALAKDQIPHDSGMGSKVQSCVFNENAVEITTLRVNEYHKSVLEEEDGSQSTNGFSNDSAITHSPPLCGNGYTYKGTNYHHLEEEQQSLIDFKASCYNNLTQVASESLLNFEQNRMVPVNTYMKDDISVWENNLHHQWSQISPRNTSELRPVQDSSCFQSSSSSYSAKEKQLHGESSSYGWLYSHQTIPAHHCIQDPGVQEPISKKRISLAENMKAAKKQCTNESKMAKPNKSGASKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVKEAIDAILSSQRSEKEVQPQSR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30339g00016 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Stsc30339g00016 332 Pfam Helix-loop-helix DNA-binding domain 245 285 IPR011598 GO:0046983
Stsc30339g00016 332 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 85 293 IPR045843 GO:0003700|GO:0006355
Stsc30339g00016 332 Gene3D - 229 292 IPR036638 GO:0046983
Stsc30339g00016 332 MobiDBLite consensus disorder prediction 221 247 - -
Stsc30339g00016 332 SMART finulus 241 290 IPR011598 GO:0046983
Stsc30339g00016 332 MobiDBLite consensus disorder prediction 221 240 - -
Stsc30339g00016 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 294 IPR036638 GO:0046983
Stsc30339g00016 332 CDD bHLH_AtIND_like 236 298 - -
Stsc30339g00016 332 FunFam Transcription factor bHLH83 233 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30339g00016 Stsc-Chr30339 75238 76762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30339g00016 84 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.791 9.57e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30339g00016 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30339g00016 - - gmx:100810010 394.815