Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30339g00005 ATGGAGCACATGATGGGTCTGCTGAGAATTCATGTCCAAAAAGGAGTAAACCTTGCTGTGAGGGATGTAGTAAGCAGTGACCCTTATGTTATCATCAGAATGGGCAAGCAGAAGGTGAAGACTAAGGTGGTGAAGAAGAATATCAACCCTGAATGGAATGATGATTTGACTTTGTCCGTTTCAGATCCTAGTCTCCCAGTGCACCTATTTGTGCATGACAAGGATACATTCAGCCTTGATGACAAAATGGGGGATGCTGAGTTCGAGATCGGCCCGTTTGTGGAAGCGCTGAAGATGCAGCTGCAAGGTGTCCCGAACAACACCATAGTTACAAGGGTGCAGCCTAGCAGACAGAACTGCTTGGCAGAGGAGAGCCACATTGTGTGGAGAGATGGGAAGGTGGTGCAGAACCTGGTTCTTAGGCTAAGAAATGTGGAGTCTGGTGAAGTGGAGTTACAACTCCAATGGATTCACATTCCTGGTTCCAAGGGTCTTTAA 498 0.4719 MEHMMGLLRIHVQKGVNLAVRDVVSSDPYVIIRMGKQKVKTKVVKKNINPEWNDDLTLSVSDPSLPVHLFVHDKDTFSLDDKMGDAEFEIGPFVEALKMQLQGVPNNTIVTRVQPSRQNCLAEESHIVWRDGKVVQNLVLRLRNVESGEVELQLQWIHIPGSKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30339g00005 165 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Stsc30339g00005 165 Gene3D C2 domain 3 161 IPR035892 -
Stsc30339g00005 165 Pfam C2 domain 6 92 IPR000008 -
Stsc30339g00005 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 151 IPR035892 -
Stsc30339g00005 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Stsc30339g00005 165 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30339g00005 Stsc-Chr30339 39696 41434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30339g00005 38 165 C2H2 Transcription Factor Family AT1G70790 55.385 2.68e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30339g00005 - - cave:132181516 278.1