Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30339g00003 ATGAAGAGGGATCATAGTGAAGCTGGCTCCAGCTACGGCCAGCAAGGTAGCAGCAGCAGCAGCGTGGCCAAAGGCGAATGTTCGTCAATGTCGAGTGGGAAGGCCAAGATGTGGGAGGAAGACCACGACCCAAGCTCCGGCGGCGGCGGTGGCATGGACGAGCTCCTCGCTGCTCTTGGTTACAAGGTTCGGTCCTCAGACATGGCAGACGTGGCCCAGAAGCTAGAGCAGCTGGAGATGGTTATGGGTAGCGCGCAAGAAGATGGAATTTCCCACCTCGCTACTGACACCGTTCACTACGACCCTACGGATCTCTACTCGTGGGTTCAGAGCATGATCAATGAGCTCAACCCTCCCCCAACCGCCTCCGCAAGCACCTCACTTCTGTGCACTTCTCAAATCGAGGAGAACCCTTCACGCGCGTTCACGGACGACTCGGAGTATGATCTGAGAGCCATCCCTGGCGTCGCCGTTTACCCTCAAAACGACGAACCCACCAACAAACGGCTAAAAACGCATCCTGTTGCGGAAATCGGGTCGGATGGTATTCAAGAACCGACCCGGCCAGTTGTCCTGGTGGATTCCCAAGAAACAGGAGTCCGTCTAGTCCACAGCCTCTTAGCCTGTGCGGAGGCAGTTCAGCAAGAAAACCTAAAGTTGGCAGACGCGCTTGTAAAGCACGTGGGTGTACTCGCGGCGTCGCAGGCGGGTGCGATGGGGAAAGTTGCATCTTACTTCGCACAGGCACTTGCGAGGAGGATTTACCAGATTTACCCTCAAGAAGCCATGGAGTCTTCTTTCTCAGATGTTCTCCACATGCATTTCTACGAGGCCTGCCCTTACCTCAAATTCGCCCACTTCACAGCCAACCAGGCCATACTCGAGGCCTTCGCCTCTGCCACTACTGTCCACGTCATCGATTTCGGCCTTAAGCAAGGGATGCAGTGGCCCGCACTCCTCCAGGCCCTCACATTGCGCCCTGGCGGCCCGCCCACTTTCCGTTTGACTGGAATAGGCCCCCCGCAGCCCGACAACACCGATGCTCTCCAGCAAGTTGGATGGAAGCTCGCACAACTCGCACAAACCATTGGCGTTCAATTCGAGTTTCGCGGCTTCGTCTGTTCCAGTCTCTCGGATCTCGACCCGGACATGCTCGAGATCCGACCCGGAGAAGCAGTTGCGGTTAACTCCGTATTCGAGTTGCATCGGATGCTGGCCCGCCCCGGCTCCATCGAGAAAGTTCTCGGCACGGTCAAGAAGATCAAGCCAAGGATCTTCACGGTGGTGGAGCAGGAAGCCAACCATAACGGTCCGGTTTTTGTGGACCGGTTCACGGAGGCCTTGCATTATTACTCGAGCTTGTTTGACTCGCTGGAGGGATCGGCGTCGACGGGGATAGGGGCAGCGGCGCCGAGTGAGGACCTATTGATGTCGGAGTTGTACCTTGGGAGGCAAATTTGCAACGTGGTGGCGTGCGAGGGCACAGAGCGCGTGGAGCGTCACGAGACGCTGACGCAGTGGCGGGCCAGGANNNNNNNNNNTGAGCGGGTTCGAGCCGGTCCACCTTGGTTCGAACGCTTTCAAGCAGGCGAGCATGTTGCTGGCGCTGTTCGCGGGTGGAGATGGTTACAGGGTGGAGGAGAACAACGGGTGCCTTATGCTTGGGTGGCACACTAG 1677 0.5725 MKRDHSEAGSSYGQQGSSSSSVAKGECSSMSSGKAKMWEEDHDPSSGGGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEDGISHLATDTVHYDPTDLYSWVQSMINELNPPPTASASTSLLCTSQIEENPSRAFTDDSEYDLRAIPGVAVYPQNDEPTNKRLKTHPVAEIGSDGIQEPTRPVVLVDSQETGVRLVHSLLACAEAVQQENLKLADALVKHVGVLAASQAGAMGKVASYFAQALARRIYQIYPQEAMESSFSDVLHMHFYEACPYLKFAHFTANQAILEAFASATTVHVIDFGLKQGMQWPALLQALTLRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCSSLSDLDPDMLEIRPGEAVAVNSVFELHRMLARPGSIEKVLGTVKKIKPRIFTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSASTGIGAAAPSEDLLMSELYLGRQICNVVACEGTERVERHETLTQWRARXXXXERVRAGPPWFERFQAGEHVAGAVRGWRWLQGGGEQRVPYAWVAH 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30339g00003 558 MobiDBLite consensus disorder prediction 1 53 - -
Stsc30339g00003 558 Pfam Transcriptional regulator DELLA protein N terminal 53 120 IPR021914 -
Stsc30339g00003 558 Coils Coil 68 88 - -
Stsc30339g00003 558 ProSiteProfiles GRAS family profile. 193 558 IPR005202 -
Stsc30339g00003 558 MobiDBLite consensus disorder prediction 8 28 - -
Stsc30339g00003 558 Gene3D - 51 116 IPR038088 -
Stsc30339g00003 558 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 137 512 IPR005202 -
Stsc30339g00003 558 FunFam DELLA protein GAI 51 116 - -
Stsc30339g00003 558 SMART DELLA_2 53 126 - -
Stsc30339g00003 558 Pfam GRAS domain family 202 511 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30339g00003 Stsc-Chr30339 31502 33961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30339g00003 1 510 GRAS Transcription Factor Family AT2G01570 59.375 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30339g00003 GRAS 8.2e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30339g00003 K14494 - gmx:100799695 742.651