Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30337g00012 ATGGGTTCCGACATTTGCGTCAATGGTTCTTGCTGTGTACACGAATGGAAGAAGGGATGGCCTCTACGATCTGGTGGATTCGCCCAACTATGCATCAAGTGCGGATTTATGGAGGAATGGAAGCGGGAGGTACTTGATTCATTATCTGCAAGTGAGTATTCAGTATTCTGTAATAACTTCCATCGTCGCGATACTGGTTGGAAGGAGTGTAACTTTTGCAACAAGCCTATTCACTGTGGATGCATAGTATCTAAATCTTTGTTTGAGTACCTTGACTTTGGCGGCGTAGGATGTGTTAGCTGTGTAAATGCTTCCCAGCTACGTTTGATGCGGAATACTGAAAATGGGTCTGTTTCAACTACCAAAAATAATGCAAGTGATCGACACTCTGCTCATATTGACAACAAACAGTTTGTTAGTAGTGTTGATGAAGGAAAACTTATGGAGTTCTGCAGAATTGTTGAAGCTAGCGAATCGAGCCGTTGGAATCATGCTCAGAGAGACAGCTTAATTTCATGTAATGGGCAAAATGGCAAAGAAGTGACATTCAGGGAAGTGGAAAGTGGATTTTCAAATGTGATAAAGCCATCGGTACAGTCATTATCGTTTGCTGCTTTAGAAAATAGTAGACCGACATGGGAGATTAAAAATAGACATGAACCAACGACTCAACCATCTTTGAACATGTGTCTGGGAAATCCTTCCGGGAGCAACTCTGTGCTGCCTTCAGCAACTGAGATTGCAGAAGGAAGAGTTGAGAGCAAGGCTTCTAACTTTCAACAAAGATCTCGACCCATATTGCCCAAACCGTCGAAATCCGGGCTTACTATGAATGTGGAAACAGATAAAGGCTCGACTTCTCAGGCACGCATTGCTCGGCCACCTGCCGAGGGGAGGGGTAAAAACCAGTTGCTTCCTCGATACTGGCCCAGGATCACTGATCAAGAACTGGAGCGGTTGTCTGGAGATTTGAAGTCCACTGTTGTACCATTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATCGGTCGTCTTGTTCTCCCAAAAGCATGTGCCGAGGCTTATTTTCCTCATATTTCACAATCAGAAGGTCTTCCTTTGCGGGTCCAAGACGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTCGAATGTATGTATTGGAGGGTGTTACACCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACCGTTACATTTAGTCGGATAGATCCGGGGGGTAAACTTGTTATGGGTTTCAGGAGGGCGACAAATTCTCCAGATACCCAGGATGCCTCTACATCTGCACAATCGAACGGCATTTCAACTACTGGAACCACCTCTGGTGGAACTGAGAATTTGCCAGGAAGTAGTTATGCTGATCATCTCCAGTCGGCGAAAGGGAATGGGGAACCTAACTCTACTGGACATTCGGACCATCCGCGTTCGGGTCCTGGAGCTGCTGGTGCACTTACAACTGAAAATTGTGAGGAGACAATAAACAATCATTCCCTCAAGCAACCAATTCCAGTTTCAGACAAGAAGAGGGCTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTCATTGATAACGAAGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCGCCACCTAGTGTCAAGCCAAGCATTGTCACGATCGAGGACCAAATATTTGAAGAATACGATGAGCCCCCGGTTTTTGGAAAGAGGACTATATTCAGTGCATCTTCATCTGGGGGGAAGGAGCAGTGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCTGTCGATGCTCTCCTTCCTCCCAAGTGGAATTGCTCTGAGAATGTTTGGGATGCAAGCAGGGCTTCATGTTCTGCTTCGGAGGAGCTGAGTTCAAGGGAATTAGAAAGTCTCCTGAGAACCAACAAAGATCTTAAGAAGCGGAGAATCGTTGAGACTAATAAGCCAATCCAAGAGCAAGAGCCTTCTGGGTTAGATGCTCTTGCCAGTGCTGCAGTTTTGGGAGGCAACCTTGTTGATCCTGCCGAGTCATCAGCTGGAGCCACCACTAGACACCCTAGACACCGTCCCGGCTGCTCCTGTATTGTATGCATTCAACCCCCTAGTGGAAAGGGGAGACACAAACCGACGTGTACTTGCAACGTGTGCATGACCGTGAAGCGCCGATTCAAAACCCTGATGCTTAGAAAGAAGAAGCGCCAATCAGAACGCGAAGCAGATGCTGCTCAGAAAGTTCAAATTCCACGAAAAGATGAGTCAGATACCAGCGGAAGAGCTTCACGAGATGATCATAAACCGAGCCACTCAGACAAAGAGGGAGGACTAAACAAAGACCAACAACCAGCCCATGCGGGAGAGTCGAATGCCGGAGAAATAGACCTGAACTCGCATCCAAATCGTGATGACATGGCAGCCGATACATCAGCGGTTAGCACCTCGAATCTTCCTGAAACAACAAACCATGAGGTAAGGAACTATATGAATCAAAATGGCGTTAGAAGCTATAATAATGGTGAAGTGCAGGATGGTCAGCATCCTTCTTTACTCAATCAGTCTAATGGAGGGTGCTTTGGATCATCCATTGTCTGGAAAATGGAAAGAAAAGATGAGGTTTACAATCATGCCAATCAAAGTCAAAACAACAATCCTTCTTGA 2715 0.4589 MGSDICVNGSCCVHEWKKGWPLRSGGFAQLCIKCGFMEEWKREVLDSLSASEYSVFCNNFHRRDTGWKECNFCNKPIHCGCIVSKSLFEYLDFGGVGCVSCVNASQLRLMRNTENGSVSTTKNNASDRHSAHIDNKQFVSSVDEGKLMEFCRIVEASESSRWNHAQRDSLISCNGQNGKEVTFREVESGFSNVIKPSVQSLSFAALENSRPTWEIKNRHEPTTQPSLNMCLGNPSGSNSVLPSATEIAEGRVESKASNFQQRSRPILPKPSKSGLTMNVETDKGSTSQARIARPPAEGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRRATNSPDTQDASTSAQSNGISTTGTTSGGTENLPGSSYADHLQSAKGNGEPNSTGHSDHPRSGPGAAGALTTENCEETINNHSLKQPIPVSDKKRARNIGPKSKRLLIDNEDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQIFEEYDEPPVFGKRTIFSASSSGGKEQWAQCDDCSKWRKLPVDALLPPKWNCSENVWDASRASCSASEELSSRELESLLRTNKDLKKRRIVETNKPIQEQEPSGLDALASAAVLGGNLVDPAESSAGATTRHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKVQIPRKDESDTSGRASRDDHKPSHSDKEGGLNKDQQPAHAGESNAGEIDLNSHPNRDDMAADTSAVSTSNLPETTNHEVRNYMNQNGVRSYNNGEVQDGQHPSLLNQSNGGCFGSSIVWKMERKDEVYNHANQSQNNNPS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 748 840 - -
Stsc30337g00012 904 SMART B3_2 332 433 IPR003340 GO:0003677
Stsc30337g00012 904 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Stsc30337g00012 904 CDD B3_DNA 330 431 IPR003340 GO:0003677
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 821 840 - -
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 274 288 - -
Stsc30337g00012 904 Gene3D - 310 437 IPR015300 -
Stsc30337g00012 904 ProSiteProfiles B3 DNA-binding domain profile. 332 433 IPR003340 GO:0003677
Stsc30337g00012 904 ProSiteProfiles Zinc finger CW-type profile. 595 645 IPR011124 GO:0008270
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 427 499 - -
Stsc30337g00012 904 Pfam B3 DNA binding domain 332 432 IPR003340 GO:0003677
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 258 302 - -
Stsc30337g00012 904 FunFam B3 domain-containing transcription repressor VAL1 310 437 - -
Stsc30337g00012 904 Gene3D - 590 644 - -
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 751 797 - -
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 852 874 - -
Stsc30337g00012 904 Pfam CW-type Zinc Finger 600 642 IPR011124 GO:0008270
Stsc30337g00012 904 SUPERFAMILY DNA-binding pseudobarrel domain 330 433 IPR015300 -
Stsc30337g00012 904 MobiDBLite consensus disorder prediction 432 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30337g00012 Stsc-Chr30337 78258 85495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30337g00012 1 825 B3 DNA Binding Superfamily AT2G30470 49.227 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30337g00012 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30337g00012 K09287 - gmx:100789848 1314.67