Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30337g00005 ATGCTTGATATGGGTTTTGAACTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAATACTTGGCTAATCCTGTACAAGTCAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCGCAAACTCTCGTGAAGGTCTCTGAAAATGAGAAGATTGATCGTCTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTTACAATAGTGTTTGTTGAAAGAAAGACAAGATGTGATGAAATTGCTGAGGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAAGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGCGGCTTGGATGTCACCGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCAACTTCATTTTACACTGATCGAGACATGTTTCTCGTAGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCCGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAATTTGGATTGGGACCTGCTTCAATTAACATTGAAGATAAATATAGATTTATGATTACTACCTCAAACAGTAAAAAAGTAGGTGCAGCTGATAGTGCTTGGGATGATTAG 861 0.4193 MLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKQFGLGPASINIEDKYRFMITTSNSKKVGAADSAWDD 286
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc30337g00005 286 CDD SF2_C_DEAD 60 198 - -
Stsc30337g00005 286 Pfam Helicase conserved C-terminal domain 72 189 IPR001650 -
Stsc30337g00005 286 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 208 - -
Stsc30337g00005 286 Coils Coil 230 250 - -
Stsc30337g00005 286 Gene3D - 1 55 IPR027417 -
Stsc30337g00005 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 213 IPR027417 -
Stsc30337g00005 286 SMART helicmild6 108 189 IPR001650 -
Stsc30337g00005 286 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 48 IPR014001 -
Stsc30337g00005 286 Gene3D - 56 248 IPR027417 -
Stsc30337g00005 286 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 72 230 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc30337g00005 Stsc-Chr30337 23211 26573 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30337g00005 1 211 Eukaryotic Initiation Factors Gene Family AT3G19760 35.211 3.98e-37 134
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30337g00005 K12823 - gmx:100787545 496.123