Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30337g00005 | ATGCTTGATATGGGTTTTGAACTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAATACTTGGCTAATCCTGTACAAGTCAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCGCAAACTCTCGTGAAGGTCTCTGAAAATGAGAAGATTGATCGTCTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTTACAATAGTGTTTGTTGAAAGAAAGACAAGATGTGATGAAATTGCTGAGGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAAGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGCGGCTTGGATGTCACCGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCAACTTCATTTTACACTGATCGAGACATGTTTCTCGTAGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCCGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAATTTGGATTGGGACCTGCTTCAATTAACATTGAAGATAAATATAGATTTATGATTACTACCTCAAACAGTAAAAAAGTAGGTGCAGCTGATAGTGCTTGGGATGATTAG | 861 | 0.4193 | MLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKQFGLGPASINIEDKYRFMITTSNSKKVGAADSAWDD | 286 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30337g00005 | 286 | CDD | SF2_C_DEAD | 60 | 198 | - | - | |
Stsc30337g00005 | 286 | Pfam | Helicase conserved C-terminal domain | 72 | 189 | IPR001650 | - | |
Stsc30337g00005 | 286 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 1 | 208 | - | - | |
Stsc30337g00005 | 286 | Coils | Coil | 230 | 250 | - | - | |
Stsc30337g00005 | 286 | Gene3D | - | 1 | 55 | IPR027417 | - | |
Stsc30337g00005 | 286 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 213 | IPR027417 | - | |
Stsc30337g00005 | 286 | SMART | helicmild6 | 108 | 189 | IPR001650 | - | |
Stsc30337g00005 | 286 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 48 | IPR014001 | - | |
Stsc30337g00005 | 286 | Gene3D | - | 56 | 248 | IPR027417 | - | |
Stsc30337g00005 | 286 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 72 | 230 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30337g00005 | Stsc-Chr30337 | 23211 | 26573 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30337g00005 | 1 | 211 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 35.211 | 3.98e-37 | 134 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30337g00005 | K12823 | - | gmx:100787545 | 496.123 |