Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30336g00006 ATGGAGAGGCACAAATGCTGCAAGCTCTGCTCAAGAACCTTCCCTAATGGAAGAGCCCTAGGTGGTCACATGAAGGCTCACTTAGCCACTTTCCCTCTCCCTCCAAAACCCCCTCAACCACCACCACCATTGTTACCTTCTTCCGAATCATCCTCTTCGTTTTCCTCATTCTCTGAATCAGAACCAGAAGATAAGGCTGGTTTGGTTTATGGATTGAGGGAGAATCCCAAGAAGAGTTTCAGAGTCGCAGATCCCAAGTTCTCTTCCTTCCCTGCACCACCACCACCGCCGCCACCACTTCCAGCACCTGACTCTGTTCAAGACAGAGAGAGCGAGACCGAGTCATCAAAGAATCCAACTCGGCAACGATCCAAGCGAACTCGGAGAACGGGGTCCATTCTTCACAGCAAGAGCTCAAATAAAGAGGACGCTGATGGCGATAAGCACGAAGAAAGGCTCAAGAAGAAGCAGCCCAAGCTTGGGTTTATGGAATCGCCACCACAATCAGAAGAACATGAACACGAGCAACAAGAACCGGTGAGCTCCGTCTCAGAGACTTCAGTCGTGGAAGACGTCGCCATGTTCCTGGTCATGCTTTCAAGAGACACGTGGCACAACAAGAATAATGCAGTTGGAGTAATAAAACAAGATCATGAAGAAGAACGAGAAGAGGAAGCTGAAAGATCAAAAGATGAGAATGAAATGAAGACGAAGAAGAAGGTTCGAGTTCGCGGGAAGCATAATCATCGGTGCGAGAACTGCAGTAAAACGTTTCGATCTTCCAGGGCGTTGGGAAGCCATAAGAGCATATGCTGTGAGGGAGGAAGATCAGGAGGAAGTGACAGAATCTTCGAATGTCCGTTTTGTTATAAAATCTTTGGGTCTGGGCAAGCCCTTGGTGGTCACAAGAGATCTCATCTCATTGCCATGGCTGCACCTTCCTCGTCTTCTTCTACTGCCAACCATTCCTTTGTTTTCAAGGATTCCGGAGTAAAGACTTTTATAGATCTCAACTTGCCTGCTCCACTGGAAGAAGAACAAGATGAAGATGACTTTGGGGTTGTTTCTGATGTTTCCGATGCTTAA 1086 0.4761 MERHKCCKLCSRTFPNGRALGGHMKAHLATFPLPPKPPQPPPPLLPSSESSSSFSSFSESEPEDKAGLVYGLRENPKKSFRVADPKFSSFPAPPPPPPPLPAPDSVQDRESETESSKNPTRQRSKRTRRTGSILHSKSSNKEDADGDKHEERLKKKQPKLGFMESPPQSEEHEHEQQEPVSSVSETSVVEDVAMFLVMLSRDTWHNKNNAVGVIKQDHEEEREEEAERSKDENEMKTKKKVRVRGKHNHRCENCSKTFRSSRALGSHKSICCEGGRSGGSDRIFECPFCYKIFGSGQALGGHKRSHLIAMAAPSSSSSTANHSFVFKDSGVKTFIDLNLPAPLEEEQDEDDFGVVSDVSDA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 215 239 - -
Stsc30336g00006 361 ProSitePatterns Zinc finger C2H2 type domain signature. 286 306 IPR013087 -
Stsc30336g00006 361 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 352 IPR044303 GO:0006355
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 135 159 - -
Stsc30336g00006 361 Pfam C2H2-type zinc finger 6 29 - -
Stsc30336g00006 361 Pfam C2H2-type zinc finger 284 307 - -
Stsc30336g00006 361 Pfam C2H2-type zinc finger 249 268 - -
Stsc30336g00006 361 SUPERFAMILY beta-beta-alpha zinc fingers 6 268 IPR036236 -
Stsc30336g00006 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 306 IPR013087 -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 28 186 - -
Stsc30336g00006 361 Coils Coil 215 235 - -
Stsc30336g00006 361 Gene3D Classic Zinc Finger 214 311 - -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 31 47 - -
Stsc30336g00006 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 32 IPR013087 -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 107 121 - -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 215 243 - -
Stsc30336g00006 361 ProSitePatterns Zinc finger C2H2 type domain signature. 6 27 IPR013087 -
Stsc30336g00006 361 SMART c2h2final6 5 27 IPR013087 -
Stsc30336g00006 361 SMART c2h2final6 249 269 IPR013087 -
Stsc30336g00006 361 SMART c2h2final6 284 306 IPR013087 -
Stsc30336g00006 361 SUPERFAMILY beta-beta-alpha zinc fingers 281 307 IPR036236 -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 88 104 - -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 342 361 - -
Stsc30336g00006 361 MobiDBLite consensus disorder prediction 66 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30336g00006 Stsc-Chr30336 61737 62910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30336g00006 2 347 C2H2 Transcription Factor Family AT1G02030 35.083 2.67e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30336g00006 zf-C2H2_6 4.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30336g00006 - - aip:107629628 400.979