Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30336g00004 ATGATGATGATGATGCAGGGTGGAAGATTGATGGAAGAAACAGCAGTGATTGGAGGGTTGATTGGTGTGCAGTTTATGACTGCAGGGAATGCAGTTTTGATGAGTTTTGTTATGTCTTTGGGACTCAAATCTCTCACCCTTGTTACATTCATGTCCTTTTCTACATTCCTTTTGCTCTCTCCTCTTGCCTTCTACTCTGAAAGGAGCATGTGGCCTAAGAAACTCAGTTTCAAGTTGATTTTGAAGTTGATCTTGCTTTCCTTTGGAGGGACAACATTCCAAGCATTTATGCTGAAAGGAATGAAGCTAACATCACCAGCAATGGGCACTGCCATGCCAAACATTGCCCCTGGACTTATCTTCCTCATTGCATGGATCTTTCAGTTGGAAAAAGTGAACACAAAATCGACATATAGCAGAGTCAAAATCGTTGGGACAATACTTTGTGTGGTAGGGGCTTTTGCAATGAGCATAATGCAAAGCATGTCCACCAACATACAACCAACATCGTCACTTCAATATTTATCAAATCCAACAGCAGATGATGTTGTATTTGACAAAAACAAGATATTGGGTTGCATCTATCTTTTGCTCGCAGTCTCTTCATTGTCAAGTGCCCTAGTCTTCCAGGCTTTTATATATAGAGATTTTCCAGCACCGATATCGTTGTGCGTGATCACATCGTTTATAGGGACGTTCATGACAGCAGCATTTCAATACCTTGAAGAACACGAAATCCAATTTGGGTTGGATGTTCTTAGTGCTCGAGATCTCATCTTCTATTATCTTCTGGAAGGTGCAATAAACGGAGTGTGCATAAGCTACAGTAATTGGGCAATAAAGAAGAAAGGGCCAGTTTTGGTGTCCATGTTCAGCCCTATTGGCACCGTTTGCTCTGCCATTTTCTCTGTTCTTACCATAGGAGTCTCCCTTAATGTTGGAAGCTATGGGGGCATGTTCATAATGTTTACTGGGCTTTACTTTTTCCTTTGGGCAAAAGGGAAAGAAGAAGAAACTGAAACTGAAGGAAGTGGCAAACAAGGTGGATATGATGTCGAGAAGCCTCTCTTAGCTTAG 1077 0.416 MMMMMQGGRLMEETAVIGGLIGVQFMTAGNAVLMSFVMSLGLKSLTLVTFMSFSTFLLLSPLAFYSERSMWPKKLSFKLILKLILLSFGGTTFQAFMLKGMKLTSPAMGTAMPNIAPGLIFLIAWIFQLEKVNTKSTYSRVKIVGTILCVVGAFAMSIMQSMSTNIQPTSSLQYLSNPTADDVVFDKNKILGCIYLLLAVSSLSSALVFQAFIYRDFPAPISLCVITSFIGTFMTAAFQYLEEHEIQFGLDVLSARDLIFYYLLEGAINGVCISYSNWAIKKKGPVLVSMFSPIGTVCSAIFSVLTIGVSLNVGSYGGMFIMFTGLYFFLWAKGKEEETETEGSGKQGGYDVEKPLLA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30336g00004 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 335 - -
Stsc30336g00004 358 Pfam EamA-like transporter family 21 157 IPR000620 GO:0016020
Stsc30336g00004 358 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020
Stsc30336g00004 358 PANTHER WAT1-RELATED PROTEIN 18 339 IPR030184 GO:0016020|GO:0022857
Stsc30336g00004 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30336g00004 Stsc-Chr30336 34593 39287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30336g00004 9 347 Nodulin-like Gene Family AT5G47470 50.581 1.69e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30336g00004 - - gmx:100809182 427.172