Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30335g00001 ATGTCACAAGATTCTTGTTTGGAGGCAAATACTACAACGGCTGAGCAGTGGAAATGGACCGAAATGCAAGGCCTTGAGCTTCTTCCTGATGCTCCCATTTCACACCAATATATTAATAAACCCAACAACACAAAACTTGTCACACACCAAATGGAAACTACTACTTCTGTTTCTGAGCCCAGCAAAGATGATGATGCTCCTTCTTCTGTTACTTCTTCTTCTGGCAATGGTAGTGTTGACAACAACAACAAGCCTGAGACTCTTCCCTCTATTGGGTTCAGGGAGCTTTTCAGATTTGCTGATGGGTTGGATTATGTTCTCATGTCCATTGGAACCGTTGGAGCAATTATACACGGTTGTTCCTTGCCACTCTTCCTTCGCTTCTTTGCTGATCTTGTCAACTCTTTTGGTTCCAATGCCAACAACTTGGACAAGATGACTCAGGAAGTAGTCAAGTATGCATTTTACTTTCTGGTAGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATATCTTGTTGGATGTGGAGTGGGGAGAGGCAATCAACAAGGATGAGGATCAAGTATCTTGAAGCTGCTCTCAGCCAAGACATTCAGTTCTTCGACACCGATGTTCGAACCTCTGATGTCGTCTTTGCCATCAACACTGATGCTGTCATGGTCCAAGATGCCATCAGTGAGAAGTTGGGAAACTTCATTCATTACATGGCCACATTTGTGTCTGGTTTTGTTGTTGGTTTCACTGCAGTCTGGCAATTGGCACTCGTCACCCTTGCCGTTGTCCCTATGATCGCAGTCATCGGTGCTATTCACACCACCACATTGGCCAAGCTCTCTGGCAAAACCCAGGAAGCTCTTTCTGAAGCTGGCAACACTGTAGAACAGACAGTTGTGCAAATTCGGGTGGTGCTGGCCTTTGTCGGGGAGTCTCGAGCATTGCAGGCATACTCTTCGGCACTGAAGGTTGCCCAGAAGCTTGGCTACAAAGCTGGGTTTGCAAAGGGAATAGGACTGGGTGCCACTTACTTTGTTGTTTTCTGTTGTTATGCACTTCTTCTATGGTATGGAGGCTATCTGGTTAGGCACCACGCCACCAATGGAGGGCTTGCCATCGCCACCATGTTTGCTGTTATGATAGGTGGAATAGGTCTAGGCCAGTCTGCGCCGAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGCATAATTGATCACAAACCCTCTATAGATAAGAACAGTGAAGCTGGTTTGGAGCTTGAGACTGTAACTGGACTCTTAGAGCTAAAAAATGTGAACTTTTCATACCCGTCGAGGCCAGATGTCCCGATCCTCAACGATTTCTCGTTGAGTGTGCCTGCTGGAAAGACCATAGCCTTGGTAGGTAGCAGTGGCTCTGGCAAGAGCACTGTGGTTTCCCTCATTGAAAGATTCTATGACCCAACTTCAGGACAAGTTTTGCTGGATGGCCATGACATTAAAACATTGAAGCTTAGATGGTTGAGGCAGCAGATAGGGCTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACTATTAGAGAAAATATACTATTGGGAAGGCCTGATGCCGACCAGGTTGAGATCGAAGAAGCAGCGAGGGTAGCTAATGCTCATTCCTTCATCATCAAGCTTTCTGAAGGTTATGAAACCCAGGTAGGGGAGAGAGGCATGCAACTCTCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCTATGCTGAAAAACCCAGCAATTCTTCTCCTAGATGAGGCAACCAGTGCATTGGATTCTGAATCAGAGAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGTAGAACAACTCTTGTAATTGCGCATCGCCTCTCCACGATACGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAATGTCTCAGAAATCGGAACTCATGATGAGCTCTTTTCCAAAGGAGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCCCATGAAACTGCCATGAACAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCACCATACTCTCGCAGGCTGTCTGATTTCTCCACATCAGATTTTAGCCTGTCCCTTGATGCATCACATCCAAATTACAGGCTCGAAAAGCTTCCCTTCAAAGAGCAAGCAAGTTCCTTCTGGCGACTTGCAAAAATGAACTCTCCTGAGTGGCTTTATGCTTTGATAGGCTCTATAGGCTCCATTGTTTGTGGATCCCTTAGTGCTTTTTTTGCATATGTTCTCAGTGCTGTCCTCAGTGTCTATTACCATCCGAATCACAAGTACATGATCAGACAAATAGATAAGTACTGCTACTTGTTGATTGGTCTTTCATCAGCTGCACTTATCTTCAACACATTGCAACACTCCTTCTGGGATATTGTTGGTGAAAATCTAACAAAACGAGTGAGGGAGAAAATGCTGACAGCAGTGCTCAAGAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCCGAATCGCGGCTAGGCTTGCTCTTGATGCCAACAATGTTAGATCAGCCATTGGAGATCGAATTTCAGTGATTGTGCAGAACACGGCACTCATGCTAGTTGCTTGTACTGCAGGGTTCGTGCTGCAATGGCGCCTTGCCCTTGTCCTCATTGCTGTGTTCCCTCTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGATCTGGAAGCTTCTCATGCCAAGGCCACACAGTTAGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTTAATTCAGAAAGCAAGATTGTTGGTCTTTTCACTTCCAACCTTGAAGCTCCACTACAACGGTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCACAGTTTGCTCTTTATGCTTCCTATGCACTTGGTCTCTGGTATGCATCTTGGCTTGTGAAGCACGGAATCTCTGATTTCTCCAAAACCATCCGAGTTTTCATGGTCCTTATGGTCTCTGCTAATGGTGCTGCTGAAACATTGACATTGGCTCCTGAATTCGTCAAGGGAGGCCGAGCTATGAGGTCAGTCTTTGATCTTCTTGACCGTAGAACCGAAATTGAGCCGGATGATCCAGATGCCACACCTGTTCCTGATCGTCTTCGGGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTACCCCACGCGCCCCGATATGCCTGTGTTTCGCGACCTCAGCCTTCGTGCAAGGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAAAGCTCAGTCCTTGCACTTATACAGAGATTCTATGATCCATCATCTGGTAGGGTCATGATTGATGGAAAGGACATCAGAAGATACAATCTCAAGTCTCTAAGAAGACACATTGCTGTGGTGCCTCAGGAGCCATGCTTGTTTGCTACAACTATTTATGAGAACATTGCCTATGGACNNNNNNNNNNGTCTGCAACTGAAGCCGAGATAGTTGAGGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTTCTCTTCCAGATGGATACAAAACATTTGTTGGGGAGAGAGGAGTTCAACTCTCTGGGGGACAAAAGCAAAGAATAGCAGTTGCTCGGGCTTTCTTGAGGAAGGCCGAGCTTATGCTTCTCGATGAGGCAACAAGCGCGCTGGATGCTGAATCCGAGAGGTCAGTTCAGGAGGCTCTAGACCGTGCCTGCTCGGGGAAAACAACCATCATTGTTGCACACAGGCTATCAACCATCAGGAATGCCAATCTGATTGCTGTGATTGATGATGGCAAAGTAGCAGAACAAGGCTCCCATTCACAGTTGTTGAAGAATCATCAAGATGGGATCTATGCACGCATGATTCAACTACAAAGGTTCACACACAGCCAAGTCATTGAGATGGCATCAGGTTCAAGTTCTTCAACAAGGCCAAAGGATGTGGAAAGAGAAGGTTAG 4068 0.4629 MSQDSCLEANTTTAEQWKWTEMQGLELLPDAPISHQYINKPNNTKLVTHQMETTTSVSEPSKDDDAPSSVTSSSGNGSVDNNNKPETLPSIGFRELFRFADGLDYVLMSIGTVGAIIHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTRMRIKYLEAALSQDIQFFDTDVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSGKTQEALSEAGNTVEQTVVQIRVVLAFVGESRALQAYSSALKVAQKLGYKAGFAKGIGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDKNSEAGLELETVTGLLELKNVNFSYPSRPDVPILNDFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLSEGYETQVGERGMQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGNVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLPFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYHPNHKYMIRQIDKYCYLLIGLSSAALIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPLVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSESKIVGLFTSNLEAPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPEFVKGGRAMRSVFDLLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVLALIQRFYDPSSGRVMIDGKDIRRYNLKSLRRHIAVVPQEPCLFATTIYENIAYGXXXXSATEAEIVEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHQDGIYARMIQLQRFTHSQVIEMASGSSSSTRPKDVEREG 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30335g00001 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 397 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30335g00001 1355 CDD ABC_MTABC3_MDL1_MDL2 433 671 - -
Stsc30335g00001 1355 FunFam ABC transporter B family member 1 95 429 - -
Stsc30335g00001 1355 ProSitePatterns ABC transporters family signature. 571 585 IPR017871 GO:0005524|GO:0016887
Stsc30335g00001 1355 MobiDBLite consensus disorder prediction 44 86 - -
Stsc30335g00001 1355 Pfam ABC transporter 1106 1256 IPR003439 GO:0005524
Stsc30335g00001 1355 FunFam ABC transporter B family member 19 1053 1075 - -
Stsc30335g00001 1355 FunFam ABC transporter B family member 1 743 1052 - -
Stsc30335g00001 1355 Gene3D - 1078 1336 IPR027417 -
Stsc30335g00001 1355 Gene3D - 430 695 IPR027417 -
Stsc30335g00001 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1078 1328 IPR027417 -
Stsc30335g00001 1355 FunFam ABC transporter B family member 1 1077 1329 - -
Stsc30335g00001 1355 Pfam ABC transporter transmembrane region 109 381 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30335g00001 1355 Pfam ABC transporter transmembrane region 765 1034 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30335g00001 1355 Gene3D ABC transporter type 1, transmembrane domain 155 1060 IPR036640 GO:0005524|GO:0016020
Stsc30335g00001 1355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 668 IPR003439 GO:0005524
Stsc30335g00001 1355 SMART AAA_5 1114 1308 IPR003593 GO:0016887
Stsc30335g00001 1355 SMART AAA_5 459 645 IPR003593 GO:0016887
Stsc30335g00001 1355 SUPERFAMILY ABC transporter transmembrane region 751 1074 IPR036640 GO:0005524|GO:0016020
Stsc30335g00001 1355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1087 1325 IPR003439 GO:0005524
Stsc30335g00001 1355 CDD ABC_6TM_Pgp_ABCB1_D2_like 753 1069 - -
Stsc30335g00001 1355 CDD ABC_MTABC3_MDL1_MDL2 1087 1328 - -
Stsc30335g00001 1355 CDD ABC_6TM_Pgp_ABCB1_D1_like 108 405 - -
Stsc30335g00001 1355 Pfam ABC transporter 450 599 IPR003439 GO:0005524
Stsc30335g00001 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 764 1051 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30335g00001 1355 SUPERFAMILY ABC transporter transmembrane region 89 416 IPR036640 GO:0005524|GO:0016020
Stsc30335g00001 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 671 IPR027417 -
Stsc30335g00001 1355 PANTHER ABC TRANSPORTER B FAMILY 82 776 IPR039421 -
Stsc30335g00001 1355 FunFam ABC transporter B family member 4 422 679 - -
Stsc30335g00001 1355 ProSitePatterns ABC transporters family signature. 1228 1242 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30335g00001 Stsc-Chr30335 14752 20103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30335g00001 84 1350 Calmodulin-binding Proteins AT2G36910 87.855 0.0 2295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30335g00001 K05658 - gmx:100814667 2323.89