Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30332g00019 ATGAAACCCTCAACCGATGACGTCACCGTAAACCCCGCCGCCACCACCACCAACTCCGCCAATCCATCCAAGCCTGTCTTCCTTACCAAAGCCCAGCGCGAGCAATTGGCTCTCCAGCGCCGCCAGGAGGAAATCGCCAACCAGAAGCGCCGCCAAGAGCAGCTCCTTTCTCGTAACCGACCCTCTTCCGAATCCGCAGCCGATCCCAAACCCTCCGCTGACTCCGACCGCCGAGACCGCGACCGTGACAGGGACAGGGATAGGGATAGGGATAGGGATAGGGACAGGGACAGGGACAGAGACCGAGACCGGGAACGGGAACGGGAACGGGAGCGGGAACGGGAGCGAGATAGGGCACGCGATCGGGACCGCGAGGCGGAGCGACGGAACCGAGAGAGGGAGCGCGAAGAGGAAAGTAGGGCTCGGGAGCGCGCACGGCTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAGGAGCTCGAAGCCATTAAAGAGCAGTACCTTGGTTCCAAGAAGCCGAAGAAGCGTGTGATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACATCACGCGACATGAACGCCCTCTACCAGAACCCTCACGAGGCCCAGCTCCTCTTCGGCCGCGGATTCCGCGCCGGCATGGACCGCCGTGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAGATCCGCCGCAAGGACGGCGTCGAGGAGAAGCCTGAGGAGGCCGATGCTCAGCGCCGCAAGGAGGCTGCTGCTGACCTCTACGACACCTTCGACATGAGGGTTGACCGCCATTGGAGCGAGAAGAAGCTTGAGGAGATGACGGAAAGGGATTGGCGTATCTTCAGGGAGGACTACAACATTTCCTATAAGGGTTCCAAGATCCCTCGCCCCATGCGGAGCTGGGTGGAGAGCAAGCTCAGCAGTGAGCTCCTGAAGGCGGTGGAGAAGGCTGGGTACAAGACCCCTTCCCCCATTCAGATGGCTGCAATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCTGAGACCGGTTCCGGTAAGACTGCTGCTTTTGTTCTTCCCATGTTGAGTTACATTACTAGGCTTCCCCCCATGAGTGAGGAGAATGAGGCTGAGGGCCCTTATGCTGTTGTTATGGCTCCTACTCGCGAGCTTGCCCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATTTGGGTATTAAGGTTGTTTCCATTGTTGGTGGTCAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAAGGTTGTGAGATTGTCATTGCTACTCCCGGTCGTTTGATAGATTGTTTAGAGCGGCGATATGCTGTGCTGAACCAATGCAATTATGTTGTTCTCGACGAGGCGGATCGCATGATTGATATGGGTTTTGAGCCACAGGTGATGGGTGTCTTGGATGCCATGCCTTCCAGCAACTTGAAACCTGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTATAGGACCACTTATATGTTCAGTGCCACCATGCCTCCGGCAGTGGAGAGGCTTGCTAGGAAGTATTTGAGGAATCCTGTTGTGGTGACCATTGGCACTGCCGGAAAGGCAACTGACTTGATCAGCCAACACGTGATCATGATGAAGGAATCTGAGAAATTCCATAAACTTCAGAGGTTGCTCGATGAACTTAATGACAAGACGGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATATGGTCGCCAAGAATTTGGACAAGGAAGGGTATCGTGTGACTACTTTGCACGGAGGGAAGTCGCAGGAGCAGAGAGAAATTAGTCTGGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCCACGGATGTAGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTGATAAACTATGATATGCCTGGGAACATTGAAATGTACACCCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACTGGTGTGGCAACAACATTTCTCACTCTTCAGGACACTGATGTCTTTTATGACCTCAAACAGATGCTTATTCAAAGCAACAGCCCTGTTCCACCTGAATTGGCAAGGCACGAAGCCTCCAAGTTCAAGCCAGGGACTATTCCTGACAGACCCCCTAGACGAAATGACACTGTGTTTGCACATTAG 2199 0.5366 MKPSTDDVTVNPAATTTNSANPSKPVFLTKAQREQLALQRRQEEIANQKRRQEQLLSRNRPSSESAADPKPSADSDRRDRDRDRDRDRDRDRDRDRDRDRDRDRERERERERERERDRARDRDREAERRNREREREEESRARERARLEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSSELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30332g00019 732 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 312 340 IPR014014 GO:0003724
Stsc30332g00019 732 Coils Coil 556 576 - -
Stsc30332g00019 732 FunFam probable ATP-dependent RNA helicase DDX23 273 542 - -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 38 57 - -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 38 175 - -
Stsc30332g00019 732 Gene3D - 273 542 IPR027417 -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 70 171 - -
Stsc30332g00019 732 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 467 475 IPR000629 -
Stsc30332g00019 732 SMART ultradead3 331 553 IPR014001 -
Stsc30332g00019 732 Coils Coil 102 164 - -
Stsc30332g00019 732 Gene3D - 543 730 IPR027417 -
Stsc30332g00019 732 Pfam Helicase conserved C-terminal domain 562 670 IPR001650 -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 707 732 - -
Stsc30332g00019 732 Coils Coil 224 250 - -
Stsc30332g00019 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 343 538 IPR014001 -
Stsc30332g00019 732 Coils Coil 28 58 - -
Stsc30332g00019 732 FunFam probable ATP-dependent RNA helicase DDX23 543 731 - -
Stsc30332g00019 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 565 709 IPR001650 -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 700 732 - -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30332g00019 732 SMART helicmild6 589 670 IPR001650 -
Stsc30332g00019 732 CDD SF2_C_DEAD 550 679 - -
Stsc30332g00019 732 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 248 709 - -
Stsc30332g00019 732 CDD DEADc_DDX23 323 539 - -
Stsc30332g00019 732 MobiDBLite consensus disorder prediction 225 260 - -
Stsc30332g00019 732 Pfam DEAD/DEAH box helicase 337 527 IPR011545 GO:0003676|GO:0005524
Stsc30332g00019 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 691 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30332g00019 Stsc-Chr30332 87387 90061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30332g00019 310 692 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 2.27e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30332g00019 K12858 - gmx:100799264 1128.24