Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30332g00011 ATGGAAGCTGGAGGAGGCTTTCACGGTTACCGCAGTCTCCCTACCACTACTACTTCTGGGTTGAAGCTATCAGGGGCGGAGATTAACATGAGGGCGGTAGAAAACAACAACAACACGGGAAGCAATAATCATACAGATGACAACGAATGCACAGTGAGGGAGCAAGATCGGTTCATGCCAATAGCAAATGTGATTAGGATAATGCGCAAGATCCTACCACCACACGCTAAAATTTCAGATGATGCAAAGGAAACAATACAAGAGTGTGTGTCGGAGTACATCAGCTTCATCACCGGAGAAGCAAACGAGCGGTGCCAGAGGGAGCAAAGGAAGACCATAACCGCAGAGGACGTTCTTTGGGCGATGAGCAAGTTAGGGTTCGACGACTACATTGAGCCTCTCACTATGTACCTTCACAGGTACCGTGAGCTTGAAGGTGATCGCACCTCTATGAGAGGGGAGACACTTGGCAAGAGAACTGTTGATTATGGTGCTCTTGGTGTTGCAGCTACCTTTGTTCCACAGTTTCACATTGCACATCATCCTCATCCTAATGGCTTCTATGGTGCATCCATGGGAAATTACATTAGGGATGCACCCAATTCTGGTGGATCCTCTCTTCAGCCTCCTTCTCTAGCTAATGGGGAACCAAATACTCAATACAAATGA 669 0.4738 MEAGGGFHGYRSLPTTTTSGLKLSGAEINMRAVENNNNTGSNNHTDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGETLGKRTVDYGALGVAATFVPQFHIAHHPHPNGFYGASMGNYIRDAPNSGGSSLQPPSLANGEPNTQYK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30332g00011 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 35 169 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc30332g00011 222 FunFam Nuclear transcription factor Y subunit B-6 47 163 - -
Stsc30332g00011 222 SUPERFAMILY Histone-fold 55 153 IPR009072 GO:0046982
Stsc30332g00011 222 MobiDBLite consensus disorder prediction 199 222 - -
Stsc30332g00011 222 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc30332g00011 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Stsc30332g00011 222 Gene3D Histone, subunit A 45 162 IPR009072 GO:0046982
Stsc30332g00011 222 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Stsc30332g00011 222 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Stsc30332g00011 222 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30332g00011 Stsc-Chr30332 47567 49569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30332g00011 5 187 CCAAT-HAP3 Transcription Factor Family AT5G47670 64.039 8.42e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc30332g00011 CBFD_NFYB_HMF 6.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30332g00011 K08065 - tcc:18597346 313.538