Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30332g00007 ATGGGCGAGTCAGATAACGAGTCAGGTGGTCAAGGAGGGAACGAGTTCTCATCATCAGGAGGAGCAGGAGGAGGTGGAGGATGCAGAGAACAGGACAGGCTTCTTCCGATAGCGAACGTGGGAAGGATCATGAAGAAGGCGCTGCCAGCAAACGCGAAGATCTCGAAGGAGGCGAAAGAGACGGTTCAAGAGTGTGTGTCTGAGTTCATAAGCTTCATAACAGGGGAGGCTTCGGACAAGTGCCAGAAGGAGAAGCGGAAGACGATCAACGGGGATGATCTGTTGTGGGCCATGACTACGCTTGGATTCGAGGACTATGTGGAGCCTCTCAAGATTTATCTGCACAAGTACAGGGAGATGGAAGGTGAGAAGACTTCCATTCTTGGAGGAAGACAGCACCACTCTGATGATCATCCCGGCGGTGATTCTGCCACCGCCGGAGCTCTTTTTGGTGCTGGTGCTGGTGGTGTGCCTTCTACTATGATGATGATGATGGGGCACATTTATGGATCTGGAAATAACGGATCACCATCTTCTACTAGGTAG 546 0.5165 MGESDNESGGQGGNEFSSSGGAGGGGGCREQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEKTSILGGRQHHSDDHPGGDSATAGALFGAGAGGVPSTMMMMMGHIYGSGNNGSPSSTR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30332g00007 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Stsc30332g00007 181 MobiDBLite consensus disorder prediction 125 147 - -
Stsc30332g00007 181 Gene3D Histone, subunit A 26 145 IPR009072 GO:0046982
Stsc30332g00007 181 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc30332g00007 181 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Stsc30332g00007 181 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Stsc30332g00007 181 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Stsc30332g00007 181 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30332g00007 181 SUPERFAMILY Histone-fold 31 137 IPR009072 GO:0046982
Stsc30332g00007 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc30332g00007 181 MobiDBLite consensus disorder prediction 125 140 - -
Stsc30332g00007 181 FunFam Nuclear transcription factor Y subunit B-3 25 146 - -
Stsc30332g00007 181 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30332g00007 Stsc-Chr30332 36217 37513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30332g00007 1 132 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.273 6.09e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc30332g00007 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30332g00007 K08065 - gmx:100305641 224.557