Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30332g00005 ATGCATATTCCAAGTCAATCCTGGATGCAATCTACCTCAGGGTATGAAGATATGTACTGTGAACTTGGAATTCCAACAATGATTACCTGGAGTTATGGTGGGAAAGAAGTAGCAGTGGAAGGGTCATGGGATGGTTGGAAATCAAGAATACGGTTGCAGAGATCAGGGAAAGACTTCACAATAATGAAGGTACTGCCTTCTGGAGTATACCAATATAGATTTATTGTGGATGGACAGTGGAGGTACACTCTGGACTCGCCATGGACACAGGATGATGCAGGGAATGCTTACAATATCTTAGACTTGCAGGATTTTGTTCCTGAAGACATTGAAAGCATCTCTAGTTTTGAACCTCCTCAATCACCGGACTCAAGTTATAACAATTTACAGCTTAGTTCTGAGGATTATGCAAAGGAACCACCATTGGTTCCCCCACACTTGCAAATGACATTGCTAAATGTTCCTGTCACAAATATGGAAACGCAACCTCCTATGTCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAAGGAAGAGCACTCCGTCAGTGGTTGCACTCGGGTCAACACATCGGTTTCTTGCCAAGTATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGTTAA 636 0.4292 MHIPSQSWMQSTSGYEDMYCELGIPTMITWSYGGKEVAVEGSWDGWKSRIRLQRSGKDFTIMKVLPSGVYQYRFIVDGQWRYTLDSPWTQDDAGNAYNILDLQDFVPEDIESISSFEPPQSPDSSYNNLQLSSEDYAKEPPLVPPHLQMTLLNVPVTNMETQPPMSRPQHGVLNHLYMQKRKSTPSVVALGSTHRFLAKYVTVVLYKSLQS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30332g00005 211 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 137 207 IPR006828 GO:0005515
Stsc30332g00005 211 Gene3D - 112 209 - -
Stsc30332g00005 211 Gene3D Immunoglobulins 20 106 IPR013783 -
Stsc30332g00005 211 Pfam Glycogen recognition site of AMP-activated protein kinase 24 103 IPR032640 -
Stsc30332g00005 211 CDD E_set_AMPKbeta_like_N 25 101 - -
Stsc30332g00005 211 SUPERFAMILY E set domains 24 109 IPR014756 -
Stsc30332g00005 211 SUPERFAMILY AMPKBI-like 106 208 IPR037256 -
Stsc30332g00005 211 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 210 IPR043554 -
Stsc30332g00005 211 SMART AMPKBI_2 119 209 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30332g00005 Stsc-Chr30332 24812 26383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30332g00005 23 104 Protein tyrosine phosphatase (PTP) family AT3G01510 35.227 3.77e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30332g00005 K07199 - gmx:100777497 383.645