Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30332g00004 ATGCAAGATTTATTATTTGTAATTAAGATTAAGATATGGCGAGGAGTGGTGAATGAGGGAGGAGGAGGAAATGGAAAAGTACCAGCTGCCCTCGTAGCAGTGGCTCCCATGGATCCCATGATTTCTAAACTTGACCATCTTTATTCGCAGAATAATAATCACATTCCCGTATTAGTATATATCACTGCGATTCTTCTCTTCCCTCCCACCATGGGGAATGTGAATGTCAATAATAACAACAACGCTGCTACTCATTCAGAACAAGAAGATGACGACGAAGACGAACAAGCTTCTTCTTCGGGTACTCTCCCCACACCTCCCGCTGAATTGATGGGTCAATCTCCACCCACCAGCCCCAGAGCTACCCGTTCTCCCTTCATCTTCGCTCCTCAAGCTCCGGTGGTTCCACTACAAAGACCAGATGAGATGCATATTCCAAGTCAATCCTGGATGCAATCTACCTCAGGGTATGAAGATATGTACTGTGAACTTGGAATTCCAACAATGATTACCTGGAGTTATGGTGGGAAAGAAGTAGCAGTGGAAGGGTCATGGGATGGTTGGAAATCAAGAATACGGTTGCAGAGATCAGGGAAAGACTTCACAATAATGAAGGTACTGCCTTCTGGAGTATACCAATATAGATTTATTGTGGATGGACAGTGGAGGTACACTCTGGACTCGCCATGGACACAGGATGATGCAGGGAATGCTTACAATATCTTAGACTTGCAGGATTTTGTTCCTGAAGACATTGAAAGCATCTCTAGTTTTGAACCTCCTCAATCACCGGACTCAAGTTATAACAATTTACAGCTTAGTTCTGAGGATTATGCAAAGGAACCACCATTGGTTCCCCCACACTTGCAAATGACATTGCTAAATGTTCCTGTCACAAATATGGAAACGCAACCTCCTATGTCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAAGGAAGAGCACTCCGTCAGTGGTTGCACTCGGGTCAACACATCGGTTTCTTGCCAAGTATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGTTAA 1062 0.4416 MQDLLFVIKIKIWRGVVNEGGGGNGKVPAALVAVAPMDPMISKLDHLYSQNNNHIPVLVYITAILLFPPTMGNVNVNNNNNAATHSEQEDDDEDEQASSSGTLPTPPAELMGQSPPTSPRATRSPFIFAPQAPVVPLQRPDEMHIPSQSWMQSTSGYEDMYCELGIPTMITWSYGGKEVAVEGSWDGWKSRIRLQRSGKDFTIMKVLPSGVYQYRFIVDGQWRYTLDSPWTQDDAGNAYNILDLQDFVPEDIESISSFEPPQSPDSSYNNLQLSSEDYAKEPPLVPPHLQMTLLNVPVTNMETQPPMSRPQHGVLNHLYMQKRKSTPSVVALGSTHRFLAKYVTVVLYKSLQS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30332g00004 353 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 71 352 IPR043554 -
Stsc30332g00004 353 SUPERFAMILY AMPKBI-like 248 350 IPR037256 -
Stsc30332g00004 353 MobiDBLite consensus disorder prediction 77 124 - -
Stsc30332g00004 353 CDD E_set_AMPKbeta_like_N 167 243 - -
Stsc30332g00004 353 Gene3D - 254 351 - -
Stsc30332g00004 353 SUPERFAMILY E set domains 166 251 IPR014756 -
Stsc30332g00004 353 SMART AMPKBI_2 261 351 IPR006828 GO:0005515
Stsc30332g00004 353 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 279 349 IPR006828 GO:0005515
Stsc30332g00004 353 Pfam Glycogen recognition site of AMP-activated protein kinase 166 245 IPR032640 -
Stsc30332g00004 353 Gene3D Immunoglobulins 163 248 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30332g00004 Stsc-Chr30332 24812 27377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30332g00004 165 246 Protein tyrosine phosphatase (PTP) family AT3G01510 35.227 2.32e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30332g00004 K07199 - gmx:100777497 439.499