Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30332g00003 ATGGATCCCATGATTTCTAAACTTGACCATCTTTATTCGCAGAATAATAATCACATTCCCGTATTAGTATATATCACTGCGATTCTTCTCTTCCCTCCCACCATGGGGAATGTGAATGTCAATAATAACAACAACGCTGCTACTCATTCAGAACAAGAAGATGACGACGAAGACGAACAAGCTTCTTCTTCGGGTACTCTCCCCACACCTCCCGCTGAATTGATGGGTCAATCTCCACCCACCAGCCCCAGAGCTACCCGTTCTCCCTTCATCTTCGCTCCTCAAGCTCCGGTGGTTCCACTACAAAGACCAGATGAGATGCATATTCCAAGTCAATCCTGGATGCAATCTACCTCAGGGTATGAAGATATGTACTGTGAACTTGGAATTCCAACAATGATTACCTGGAGTTATGGTGGGAAAGAAGTAGCAGTGGAAGGGTCATGGGATGGTTGGAAATCAAGAATACGGTTGCAGAGATCAGGGAAAGACTTCACAATAATGAAGGTACTGCCTTCTGGAGTATACCAATATAGATTTATTGTGGATGGACAGTGGAGGTACACTCTGGACTCGCCATGGACACAGGATGATGCAGGGAATGCTTACAATATCTTAGACTTGCAGGATTTTGTTCCTGAAGACATTGAAAGCATCTCTAGTTTTGAACCTCCTCAATCACCGGACTCAAGTTATAACAATTTACAGCTTAGTTCTGAGGATTATGCAAAGGAACCACCATTGGTTCCCCCACACTTGCAAATGACATTGCTAAATGTTCCTGTCACAAATATGGAAACGCAACCTCCTATGTCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAAGGAAGAGCACTCCGTCAGTGGTTGCACTCGGGTCAACACATCGGTTTCTTGCCAAGTATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGTTAA 954 0.4413 MDPMISKLDHLYSQNNNHIPVLVYITAILLFPPTMGNVNVNNNNNAATHSEQEDDDEDEQASSSGTLPTPPAELMGQSPPTSPRATRSPFIFAPQAPVVPLQRPDEMHIPSQSWMQSTSGYEDMYCELGIPTMITWSYGGKEVAVEGSWDGWKSRIRLQRSGKDFTIMKVLPSGVYQYRFIVDGQWRYTLDSPWTQDDAGNAYNILDLQDFVPEDIESISSFEPPQSPDSSYNNLQLSSEDYAKEPPLVPPHLQMTLLNVPVTNMETQPPMSRPQHGVLNHLYMQKRKSTPSVVALGSTHRFLAKYVTVVLYKSLQS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30332g00003 317 MobiDBLite consensus disorder prediction 41 88 - -
Stsc30332g00003 317 SMART AMPKBI_2 225 315 IPR006828 GO:0005515
Stsc30332g00003 317 Pfam Glycogen recognition site of AMP-activated protein kinase 130 209 IPR032640 -
Stsc30332g00003 317 Gene3D Immunoglobulins 127 212 IPR013783 -
Stsc30332g00003 317 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 35 316 IPR043554 -
Stsc30332g00003 317 SUPERFAMILY E set domains 130 215 IPR014756 -
Stsc30332g00003 317 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 243 313 IPR006828 GO:0005515
Stsc30332g00003 317 Gene3D - 218 315 - -
Stsc30332g00003 317 SUPERFAMILY AMPKBI-like 212 314 IPR037256 -
Stsc30332g00003 317 CDD E_set_AMPKbeta_like_N 131 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30332g00003 Stsc-Chr30332 24429 27285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30332g00003 140 210 Protein tyrosine phosphatase (PTP) family AT3G01510 36.986 1.94e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30332g00003 K07199 - gmx:100777497 439.499