Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30330g00005 ATGATCAAAATATCACCCCTTACTTTACTTCTTCAACTCATACTGCTGTTGTTCCTTGCAAATACCATTCAGTTGGTATTTGCAAAAGGGACAGACAATGTTAGAGAAGCATGCAAGGTGACAAGGTATCCCAACCTTTGTTTCCGCTCGCTAACGCAGTTCTCCAACACTGCTGGAAGGAGCCCCAGCAAATGGGCAAGGGCAGGGGTGTCAGTGACAATAGGAGAGGTTAAGCATGTTCTAGTGTACCTTGCAAGGTTGAAGAAGAGTCAAGGGCAAGTAAGGGGAAGTAGGAACAGGGCTGCACTCTCTGATTGCATCGAAACTTTCGGAGACGCCCTCGATGAGCTTCATAGGTCTCTTGGTGTGCTAAGGAAGCTCAGCAAAAGCACCTTTGGTACCCAAATGGATGACCTTAACACATGGATCAGTGCAGCCCTCACTGATGCAGATACTTGCCTAGATGGATTTCAAGAAAAAAGTGTAGGAAAAGAGATTAGGTTGCTGAAAATTAAGGTTATCAGATCCTATTACATAACTAGTAATGCTTTAGCTCTTGTTAACAAGCTTGCCACTACAGTTCCAAAACTCTCCAACGCGGATCCACACTTTACTATTCCACCCCACACCACTCTTTTCCGATCCCCATCACCACCACCGACGGTGACCGAGTTCCGAGCGAGTTCCAAACTCGGAACTCAGTCCCCTATTTCCTCCACCTCCTCCCACACACCCCCCATTTCCGTTTCTTTCAGAAATTCCAGAACCTTCTCCTCCTCCTTCTTGTTAAAACCTCCATCAACAGCAACAATGGCTGGTTCCTCAGAACTAATCTACAGAGGCCATGAATCTCAACCAATCACCGACGACTACTCCCCCAAACCAAACAAGCCATGGCTCTCATTCACTCTAAACCCCGTCAACTACCTCCTCCGCGAGCAGCGCCTCCTCTTCACCCTCCTCGGAATCTTCATCGCCACCGCCTTCTTCACTCTCCTCCCTTCCCACAACACCAACAGCCCCTACCAATACGACACCGTTCCGATCCCGTACTTCACGCAGCACGACGCAGTGTTCCCCACGAACCACCAGAGCAACCGCCACGTGGCAGCAGCAGTGCATTCGTTCGGGAAAGTGCCGCTGGGAATAAAGAGAAAAGGTCTGAGAATTGTGGTTACCGGAGGAGCTGGTTTCGTTGGGTCCCACCTGGTGGATCGGTTGATAGCTCGAGGAGATAGTGTGATCGTTGTTGATAATTTCTTCACGGGGAGGAAGGAGAACGTGATGCACCATTTTGGGAACCCTAGATTTGAGCTCATACGACACGACGTCGTTGAACCTTTGCTTCTTGAAGTTGACCAGATCTACCACCTTGCTTGCCCTGCTTCCCCTGTTCACTACAAGTTCAACCCCGTCAAGACTATCATATCCTTTTATTTTTCTCACTAA 1449 0.4879 MIKISPLTLLLQLILLLFLANTIQLVFAKGTDNVREACKVTRYPNLCFRSLTQFSNTAGRSPSKWARAGVSVTIGEVKHVLVYLARLKKSQGQVRGSRNRAALSDCIETFGDALDELHRSLGVLRKLSKSTFGTQMDDLNTWISAALTDADTCLDGFQEKSVGKEIRLLKIKVIRSYYITSNALALVNKLATTVPKLSNADPHFTIPPHTTLFRSPSPPPTVTEFRASSKLGTQSPISSTSSHTPPISVSFRNSRTFSSSFLLKPPSTATMAGSSELIYRGHESQPITDDYSPKPNKPWLSFTLNPVNYLLREQRLLFTLLGIFIATAFFTLLPSHNTNSPYQYDTVPIPYFTQHDAVFPTNHQSNRHVAAAVHSFGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIISFYFSH 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30330g00005 482 FunFam Pectinesterase inhibitor 3 29 191 - -
Stsc30330g00005 482 Gene3D - 384 478 - -
Stsc30330g00005 482 CDD PMEI-like_3 37 192 - -
Stsc30330g00005 482 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 190 IPR035513 -
Stsc30330g00005 482 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 192 IPR035513 -
Stsc30330g00005 482 SMART PMEI_2 29 186 IPR006501 GO:0004857
Stsc30330g00005 482 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 293 475 IPR044516 GO:0042732|GO:0048040|GO:0070403
Stsc30330g00005 482 Pfam GDP-mannose 4,6 dehydratase 392 474 IPR016040 -
Stsc30330g00005 482 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 386 475 IPR036291 -
Stsc30330g00005 482 Pfam Plant invertase/pectin methylesterase inhibitor 33 186 IPR006501 GO:0004857
Stsc30330g00005 482 NCBIfam pectinesterase inhibitor domain 8 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30330g00005 Stsc-Chr30330 24521 34183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30330g00005 34 222 Carbohydrate Esterase AT3G14310 32.642 1.31e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30330g00005 K08678 - gmx:100783463 307.375